| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mevan_0671 |
|---|
| Symbol | |
|---|
| ID | 5325115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus vannielii SB |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009634 |
|---|
| Strand | + |
|---|
| Start bp | 719484 |
|---|
| End bp | 720983 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640786339 |
|---|
| Product | DNA-directed RNA polymerase subunit beta'' |
|---|
| Protein accession | YP_001323189 |
|---|
| Protein GI | 150399422 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCCC GTGTTATTGT AGATGCATTT TTTAGAGAAA ACAGTCTGGT TAAACACCAT
ATTGATTCTT ATGACGATTT TGTTGAAAAC AAGATTCAAG GAATCATTGA TGAGGTAACT
GGCGTTGAAA CGGAAATCAA AGGAGGTTAT AAGGTATCCT TTGGAAAAGT AAGGGTAACT
AAACCCATAA ATAAAGAAGC AGATGGTTCA GTAAAAGAAA TAACGCCAAT GGAAGCAAGA
ATTAGAAATC TTGCATACTC TGCGCCCCTC TACCTTGAAA TGATACCTTT AATTGGTGAA
GGTGATGAAG AAAAAACACT TTCACCAATT GAAGTTTATA TTGGAGAACT TCCAGTAATG
CTCGGTGCAA AAATCTGTCA TCTCTCTGGA AAAAGCGAAG AGGACATGAT TAACTATGGT
GAAGATCCAA AAGACCCATT AGGTTATTTT ATTGTTAATG GTTCAGAAAA AGCTGTTGTT
GCCCAGGAAG ATTTGATTCC AAACAGAATC CTCTGTGAAA AGGTTGAAAA AAACAACAAA
ATTGTTGATA TTGCAAAAGT ATTTTCAACT AGACATGGGT TTAGGGCGTT ATGTACTGTT
GAAAGAAGTC CAGATGGACT TTTAAACGTA TCTTTCCCAG GTATGCCAAG CACTATTCCG
TTAGTTATAC TAATGAGGGC ACTTGGTGCG GAATCTGACC GGGAAATTAT GGAATTAATT
TCAGACGAGC CTACTGTAGT CATGCAGTTA GTTGCAAACT TACAGGAAGC TAGAGAAGAA
CATGGGATAA ACACAACTGA AGATGCACTT GAACATATCG GAAAAAGAGT TGCTCCAGGA
CAGCCAAAAG AATACAAATT AAAAAGAGCT GAAACAATTC TATGTAATTA TTTGTTGCCA
CATATGGGAA TTGAATCTGA AAAATTAGGT GCTAAATGTA AATACCTTGG AAGAATGGCT
AAAAATTCAA TAGAACTTTA TTTAGGTTCA AGAGTTGAAG ACGATAAAGA TCATTATGCA
AACAAGAGAT TGAAATTAGC AGGAGACTTG ATGGAAGACT TATTTAGACA TTCATTCAAC
CAGTTAATTA AAGATATTAA ATACCAGCTT GAAAGACAGG CAATAAGAAA TAAAGAACCT
TCTATTCAAG CGGCAGTTAG AAGCGATGTG TTAACTGAAA GAATGAGACA TGCAATGGCT
ACAGGAAACT GGGTAGGTGG AAGAACAGGG GTATCCCAGC TTCTTGATAG GACTAGTTAT
CTTGCAACAG TATCCCAATT GAGAAGAGTT GTATCACCAC TATCCCGATC ACAACCTCAC
TTCGAAGCAA GAGACTTGCA CGCAACTCAA TGGGGTAAAA TTTGCCCATC AGAAACACCG
GAAGGTCCAA ACTGTGGTCT GGTTAAAAAT CTTGCGGTAA TGTGTAAAGT AACTACTGAT
GAAGAAGATG AAGGTATTAT TCAATTAATA AAAGAAATTG GACTTTCAAA AGACATTTAA
|
|---|
| Protein sequence | MESRVIVDAF FRENSLVKHH IDSYDDFVEN KIQGIIDEVT GVETEIKGGY KVSFGKVRVT
KPINKEADGS VKEITPMEAR IRNLAYSAPL YLEMIPLIGE GDEEKTLSPI EVYIGELPVM
LGAKICHLSG KSEEDMINYG EDPKDPLGYF IVNGSEKAVV AQEDLIPNRI LCEKVEKNNK
IVDIAKVFST RHGFRALCTV ERSPDGLLNV SFPGMPSTIP LVILMRALGA ESDREIMELI
SDEPTVVMQL VANLQEAREE HGINTTEDAL EHIGKRVAPG QPKEYKLKRA ETILCNYLLP
HMGIESEKLG AKCKYLGRMA KNSIELYLGS RVEDDKDHYA NKRLKLAGDL MEDLFRHSFN
QLIKDIKYQL ERQAIRNKEP SIQAAVRSDV LTERMRHAMA TGNWVGGRTG VSQLLDRTSY
LATVSQLRRV VSPLSRSQPH FEARDLHATQ WGKICPSETP EGPNCGLVKN LAVMCKVTTD
EEDEGIIQLI KEIGLSKDI
|
|---|
| |