| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mevan_0047 |
|---|
| Symbol | |
|---|
| ID | 5325503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus vannielii SB |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009634 |
|---|
| Strand | - |
|---|
| Start bp | 44993 |
|---|
| End bp | 46513 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 640785716 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001322574 |
|---|
| Protein GI | 150398807 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0614925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATT ATAACAATGC AGTGGTTTAT CATGATAATA ATGGAATTGA ATATGCCATT
CAGCTTAAAA AAACTCTTGA AAAGGGATTT CAGCGGGATT GTTTTTTAAT AAATTTTGAT
AATCCAAATT CAAATCTAAA TCCTACATAT GCGTTAAAAA CAAGTAAATA CGTTATATTT
TTGTTTAATT CAATGTTTCC AAATGAAAAA ATTATTTCAG AATCTAAAGT ATCTTTTGAA
ATGGAAAAAT GTGTAATTTC GATGAATTTA GCCGATAAAA GTATAGATAA CGAATTTAAC
GTATTCCAGT TAGAATTTAA CGATAATTAT ACTCTTTCAA AAAATATCGA GTTAGAACTT
GAAAAAATAA ATGATTTTGA AAAAAGAAGT GCTGACTACA TTGAAGCAAA CAGTCATTTC
CATATTGGTA GCATCTTTTT TAATTTTAAA AAGTATGACG AAGCCCTTAA AAATTACAAA
AAGGCCGTTA AAATCATGCC TGACTTTTTA GATGCGATAA ATAATGTGAA TATCCTTTCC
AATATAAAAC TTTCTAAAAT AGGGGAAAAT AACGTTAAAG AAGAATTCAA AATTATTAAT
TATCGAGAAA CTAAAATTGA AGAACTTATT CCGGATATTT TTGAAAGTGT AGATGAAAAT
TTTGAAAGTT TTGATGGGAT TAAAATTGAA GAAAACAGCA TTTTGATATC GGACGACCTA
TTTAATAACG TAGAAAGTTC AGATAATAAA TATAATAATC TTGAAAATAA TTTATCAAAA
ATAGAGAATG ATTCTTACGT CCCTATTGAA TCAATAGAAG TTAGCAATTT AGAAAAATTT
CAAGTAGATT TGGATTTAGA AAAAAAGGTT ACTGAAGAAA TAAAAAACGA TGTAGAATCT
TTTGAATATT TACCTAAAAA TAATACAAAA GAAGAAAATC CAACAATTAA TAAAGAGATA
ATTGAAAATG TATCCTTAAT TAGCGATGTA ACCTTAAAAA ACTTAAAAGA CTATGAAGAA
AACAATAATA AAGGTTTAAA ATTTTTTGAG TCTGCAAATA GTTATTATGA ATCAGGGGAA
TTTGAAAAAG CAGAAGAAGA ATACATAAAT GCAATTCAAA ATGATTTTGA AAATTCAGAA
TTACATAATA ATTACGGATG TCTTTTAGAA CAGTTTGAAA GATTTGAAGA AGCGGAAAAC
GAATTTAAAA AGGCAATATT ACTCGATAAA AATAATTCAA AAGCACAAAA TAATATTGCA
ACGCTTTTTG CAAGACTTGA TAATTATGCT AAAGCAGAAG AGCACTACAA AAAAGCAATT
GAGATTAACC CGTGTTACTG GGAAGCAATT TATAACTTAG GGGCAATGTA TGCCACAATA
AAACGATATG ATGAAGCAAT TATTCAAGTT AAGTCAATTA TAAAGATATT TAGGTCAGAA
GGAAATATTA AATTCGTTTT AGAATTAAAA AAGCTTGTAA AGCATCTTAA AAAACTTAAA
ATTCAAAACT ATAATAAGTA G
|
|---|
| Protein sequence | MADYNNAVVY HDNNGIEYAI QLKKTLEKGF QRDCFLINFD NPNSNLNPTY ALKTSKYVIF
LFNSMFPNEK IISESKVSFE MEKCVISMNL ADKSIDNEFN VFQLEFNDNY TLSKNIELEL
EKINDFEKRS ADYIEANSHF HIGSIFFNFK KYDEALKNYK KAVKIMPDFL DAINNVNILS
NIKLSKIGEN NVKEEFKIIN YRETKIEELI PDIFESVDEN FESFDGIKIE ENSILISDDL
FNNVESSDNK YNNLENNLSK IENDSYVPIE SIEVSNLEKF QVDLDLEKKV TEEIKNDVES
FEYLPKNNTK EENPTINKEI IENVSLISDV TLKNLKDYEE NNNKGLKFFE SANSYYESGE
FEKAEEEYIN AIQNDFENSE LHNNYGCLLE QFERFEEAEN EFKKAILLDK NNSKAQNNIA
TLFARLDNYA KAEEHYKKAI EINPCYWEAI YNLGAMYATI KRYDEAIIQV KSIIKIFRSE
GNIKFVLELK KLVKHLKKLK IQNYNK
|
|---|
| |