| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3845 |
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| Symbol | |
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| ID | 4182436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chelativorans sp. BNC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008254 |
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| Strand | + |
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| Start bp | 4146990 |
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| End bp | 4147550 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638069737 |
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| Product | TraF peptidase |
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| Protein accession | YP_676377 |
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| Protein GI | 110636169 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.232277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCCGC GCCGCCTCAC GCTTGTCGTC ATGCTCGCGG GCACCGCGTT GGTGGCCGCG
CCAACGTGGA CCGGCCACGG GCCGCGCTTC ATCTGGAACA CCTCGGCGAG TGTGCCGATC
GGGCTCTACG GCATCGAGCC GGTCGGTCAG GTCGACGTCG CCGATCTCGT CGCTGTGGCG
CCGCCAGAAC CGCTCGCCGA GTTCCTCGCG GAGCGCGGCT ATCTCGCACG CAACGTTCCG
CTCATCAAAC GTGTCCTCGC AGTCTCGGGC ACCGTTGTCT GCCGGCATGG AACGACGATC
ATCGCCTATG GCCACGCCTA TGGCGAGGCC CGCAATCAAG ATGCGCTGGG CCGCCCTCTG
CCGTCCTGGC AAGGCTGCCG GCAGCTCGGC GAAAACGAGG TGTTCCTGAT GAACTGGGAC
GCCTCCGACA GCTTCGATGG CCGGTATTTC GGTCCGCTTC CCACTAGCTC GATCACCGCC
CGCGTCATCC CTGTCTGGAC CGACGAGACC GGCGACGGCC GCTTCCGATG GCGGGCGGCC
GATCCGGCTC TCCAACCCTG A
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| Protein sequence | MSPRRLTLVV MLAGTALVAA PTWTGHGPRF IWNTSASVPI GLYGIEPVGQ VDVADLVAVA
PPEPLAEFLA ERGYLARNVP LIKRVLAVSG TVVCRHGTTI IAYGHAYGEA RNQDALGRPL
PSWQGCRQLG ENEVFLMNWD ASDSFDGRYF GPLPTSSITA RVIPVWTDET GDGRFRWRAA
DPALQP
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