| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1386 |
|---|
| Symbol | |
|---|
| ID | 4846943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1380036 |
|---|
| End bp | 1380719 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640116076 |
|---|
| Product | ribose 5-phosphate isomerase |
|---|
| Protein accession | YP_001047297 |
|---|
| Protein GI | 126179332 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG AAAAGCGGAA CGCAGGCTAC CGGGCGGCAG AAGAGGTCGA GGACGGGATG
GTCGTCGGAC TCGGCACCGG GTCGACCGTC TTCTTCGCGA TGGAGCGGCT GGGCAAGCGG
ATAGCAGAGG ACCGGCTCTC CATTGCCGGC GTCCCGACGT CCTACCAGGC GGCCATCCGG
GCACGCCGGT ACGGCATCCC CCTCACGAGC CTCGACGAGT ATCCCGAACT CGATATCGCC
ATCGACGGGG CCGACCAGGT CGATCCGGCT CTCTGCCTGA TCAAGGGGCG CGGTGCCGCG
CTCCTCCGGG AGAAGTGCGT CTGCGACGCG GCACAAAGAG CGGTCATCGT CGTTGATGGG
ACAAAGATGG TGGAGGCCCT GAACGCGCCC GTGCCGGTCG AGGTGCTCCC GTTCGCCGTG
GAGGCGGTCT CGCGCCGGCT TGCGGCGCTC GGTGCCGACC CGGTCCTCCG GGAAGCGGTG
AAGAAAGACG GGCCGGTCGT CACCGACAAC GGCAACTTCA TCCTCGACTG CAGTTTCGGG
ACGATCGCGG ACCCCGGGCG CCTGGAGACG GCGATTGCCT CGATCCCCGG TACACTGGAG
TGCGGCCTGT TCTCGGCCTA CACAGAAAAA ATAACGGTTA TTGTCGGTGA GGAGAAGGGT
TGCAGCGTCG TATCACTGCA TTGA
|
|---|
| Protein sequence | MSAEKRNAGY RAAEEVEDGM VVGLGTGSTV FFAMERLGKR IAEDRLSIAG VPTSYQAAIR
ARRYGIPLTS LDEYPELDIA IDGADQVDPA LCLIKGRGAA LLREKCVCDA AQRAVIVVDG
TKMVEALNAP VPVEVLPFAV EAVSRRLAAL GADPVLREAV KKDGPVVTDN GNFILDCSFG
TIADPGRLET AIASIPGTLE CGLFSAYTEK ITVIVGEEKG CSVVSLH
|
|---|
| |