| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0861 |
|---|
| Symbol | |
|---|
| ID | 4847995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 838127 |
|---|
| End bp | 839305 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640115546 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001046776 |
|---|
| Protein GI | 126178811 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.543615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTACC GGTTTTCTTC CCGGATGGGG CGGGTTCCGG AGTCGTTCCT CAAAGAACTC
TTCCGGGTCT CGAGCGTCCC CGGAGTGATA TCGTTTGCAG GAGGGCTGCC GGGCTCGGCC
TACATCGACG TCGAGGGAAT CCGGGAGGCG GCCCGCGAGG TCTTCGCCGA AGAGGGGCGG
ACGGCGCTGC AGTACACGAC GACGGACGGC TACCTGCCGC TCCGGGAGTT CATCGCCGAC
CGTTACCGGA GAAGGCTCGG CCTCCCGGCG ACGCCCGAGG AGATCCAGAT CGTGAACGGT
TCCCAGCAGT GCCTGGACCT CGTCGCGAAG ATCTTCCTCG ATCCCGGCGA CGCCGTCGGG
ATGGAGCGGC CGGGCTACCT CGGGGCGATC GAGGCCTTCT CCCTCTACGA GCCGGATTTT
TATTCGGTTC CCCTGGAGGA GGACGGGCCG GATCTCGTGG CGTTCGCGTC GCTCATCCGG
GATCGTGCGC CGAAGTTCTT CTACGGCATC CCGAACTCGC AGAACCCCTC GGGGAGAACC
TACTCGGAAG GGAAGCGGCG GGCCGTCGCG GAGATCCTCG AGGGGACGGA TACGATCTTT
TACGAGGACG ACGCTTTCGG GGAGCTCTTC TTCGACGGGA AGCCACGGCT GCCGGTGAAG
CACCACCTCC CGGAGCAGAC GGTGATCTCG GGGTCGTTTT CGAAGATCGT CGCACCCGGG
ATGCGGATCG GCTGGATATA CGCGCCGGCG CCGGTCCTCC GTGAGTTCAA CGTCGCGAAG
CAGGCGGCCG ACCTCCACTC GAATTTCCTC TGCCAGGTGA TCCTGCACCG CTACCTCGCG
ACCCACGATC TCGACGCCCA CGTCGCCCGG GTCTCTGCGG TCTACGGCGA GCACTGCCGG
CTGATGTGCG AACTCCTCGA CGACCTGATG CCGCCGGGCA CGACCCACAC CAACCCCGAG
GGCGGGATGT TCATGACCGC GGCCCTGCCG GGCGGCGTCT CGTCGATGGA GGTCTTTTCC
GAGGGTGTCA GAGAAGGCGT CGCGGTCCTT CCCGGGGTGC CGTTCTACGT CGGCGGCGGC
GGGGAGGATA CGATCCGGCT GAACTTCTCG GCGGCGGGCG AGGAGGAGAT CGTCGAGGGG
ATGCACCGGC TGGCGAGGGT GGTGCGGCGG CTGGCGTGA
|
|---|
| Protein sequence | MEYRFSSRMG RVPESFLKEL FRVSSVPGVI SFAGGLPGSA YIDVEGIREA AREVFAEEGR
TALQYTTTDG YLPLREFIAD RYRRRLGLPA TPEEIQIVNG SQQCLDLVAK IFLDPGDAVG
MERPGYLGAI EAFSLYEPDF YSVPLEEDGP DLVAFASLIR DRAPKFFYGI PNSQNPSGRT
YSEGKRRAVA EILEGTDTIF YEDDAFGELF FDGKPRLPVK HHLPEQTVIS GSFSKIVAPG
MRIGWIYAPA PVLREFNVAK QAADLHSNFL CQVILHRYLA THDLDAHVAR VSAVYGEHCR
LMCELLDDLM PPGTTHTNPE GGMFMTAALP GGVSSMEVFS EGVREGVAVL PGVPFYVGGG
GEDTIRLNFS AAGEEEIVEG MHRLARVVRR LA
|
|---|
| |