Gene Memar_0580 details

Gene Information

• Locus tag: Memar_0580
• Symbol: rpl6p
• ID: 4847440
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 557209
• End bp: 557733
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640115262
• Product: 50S ribosomal protein L6P
• Protein accession: YP_001046495
• Protein GI: 126178530
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03653] archaeal ribosomal protein L6P

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.141728
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATAA CACGACAGGT CGAGATCCCT CCCGGCGTTG ACGTCACGCT CGACGGCGGC 
GTGCTCACGG TCTCCGGACC GAAGGGCACG CTGGTCCGCG ACATGCGCTT CCCGCAGATC 
GACCTCATGG TCGAAGGCGG CGAAGTCGTC GTCTCCACGG CATCCGAAAA GAAGCGGATC 
CTTGCCATGA CCGGCACGCT CGAGGCCCAT GCGAAGAACA TGATCCGGGG TGTCGCCGAC 
GGCTACGAGT ACCGGATGAA GGTGGTCTAC AGCCACTTCC CGATCCAGCT CAAGCAGCAG 
GGCAACCGCC TTGAGATCAC CAACTTCCTC GGCGAGAAAC AGCCCCGGAT CGCAAAGATC 
ATCGAGGGCG TCACCGTCAA GATCGGAAAC GATGAGGTGA CTATCACCGG TATCGACAAG 
GAGAAGGTTG GCAACACGGC CGCAAACATC GAGCACGCGA CCAGGATCAC GAAGCGCGAT 
CCCCGGGTGT TCCAGGACGG CATCTACATC ACCGAGAGGG TGTGA 

 

Protein sequence

MAITRQVEIP PGVDVTLDGG VLTVSGPKGT LVRDMRFPQI DLMVEGGEVV VSTASEKKRI 
LAMTGTLEAH AKNMIRGVAD GYEYRMKVVY SHFPIQLKQQ GNRLEITNFL GEKQPRIAKI 
IEGVTVKIGN DEVTITGIDK EKVGNTAANI EHATRITKRD PRVFQDGIYI TERV