| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0416 |
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| Symbol | |
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| ID | 4846001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | + |
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| Start bp | 399027 |
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| End bp | 400709 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640115091 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001046331 |
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| Protein GI | 126178366 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.563354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGGAG ATATGGATGT TCAATTGCGG GAGATAATGC GTCTTCCGGC CGAGACCGAG
TGGATCGAGT TCAAGGAAGC AAAAAATAAC TATGATTTCG ATAAAATTGG AAAATATTTC
TCAGCATTGA GCAATGAAGC CAACCTGAAC GAAAAGCCTG CAGGCTGGCT TATCTTTGGT
GTCACCGACA AACTGCCCAG AGAGATTATC GGCTCAAACT ATCGGCTCAC TCCGCCTGGC
CTTGACCGCC TCAAAGAGGA GATTGCGCGG CATACGAACC ACGAAATGAC ATTTGCTGGC
ATTCATGAAC TCATGATCGA TGGAAAGCGA GTGATTATGT TTGAAACCCC TCCGGCCGCA
CGCGGCATCC CGACAACATG GAAAAGTGTT GCATATGGTC GTATCCATGA GTCACTCGGA
CCTCTTGGTC TCCATGAGAT TGAAGTGATA CGCAGGCAGG CTCCTCTGGA TGACTGGTCG
GCAAAGGTGT GTGTGGGAGC CACACTTGCG GATCTCGATC CTGAGGCAAT TGCCTTTGCG
CGGGAAAAAT ACAAAGAGAA GCATCAGGTA TTTGCAAGCG AAGTGGATGA GTGGGACGAC
GTTTCGTTCC TTGCTAGGGC GCATGTCTGT CGTCAGGGTC GGATTACGAA TGCTGCAATC
GTTCTCCTGG GAAAGAGTGA GGCCGCACAT CTTCTTTCAC CTGCAATTGC GCACATTACT
TGGGTTCTCA GGGATAAGGA CGAGGTGGAG ATTGACTACG CCCATTTCGG GCTGCCACTG
ATACTCGCCG TCGATAAGAT TTTTAGCAAG ATCAGAAACC TTACTGTCCG CCATATTTCG
GGGGAGACGC TGTTCCCACT TGAGGTAACA CAGTACGATC CCTGGGTCGT CCGTGAGGCG
CTACACAATT GTATCGCCCA TCAGGATTAC CAACAATCTG CCCGCATTAC CGTGACTGAG
AGGCCGGATT CCCTGGTGTT CACGAATCGT GGCGATTTTA TTCCGGGAAC TGTCCAGAGC
GTAATCGAGC GTGATGTGCC GCCGGACCAG TATCGGAATC CCTTTCTTGC TGGCGCGATG
GTAGAGTTGA AGATGATCGA CACCATCGGC AGTGGGATCA AAAGGATGTT CCGGATACAG
CGGGATCGTA ATTTTCCGAT GCCTGATTAT GACCTTGGTG AAGCAGGGGT GGTGAAGGTC
ACGATTCCCG GCCGGGTGAT TGATGAGAGA TACACGCGGA TGCTCATCAA ACGGAAGGAT
CTGACGCTGA TGGATGTGAT TACTCTCGAT AAAATACAGA AGGGCTACTC CATCACGCCT
GAAGAAAGAA CCATTCTCCG GACGAAGAAA CTCATTGAAG GGCGGCATCC GAATCTCTAT
GTTTCGGAGA GTGTTGCGGC CGAAACCGAC ACACGCGCCG ATTATATCAG GAAGCGGTCG
TTTGACAGGG CGCATTTCAA GAGTCTGGTG GTTGCGTACC TGAAGGCCTA CCATGAGGCA
AACAGAGCGG AGATTGAAGA CCTGCTGCTG GACAAGGTCT CAGATGCGCT GAACGAGGAA
CAGAAACATC ATTTCATCAG GGATCTACTT CAGGAGATGC GCAAAGATGG GACAATAATG
CCTATTGGGA GGACTAAAGC TGCAAAGTGG GTTCTTGTCC CTGATCAGGT GCATGATGCA
TGA
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| Protein sequence | MSGDMDVQLR EIMRLPAETE WIEFKEAKNN YDFDKIGKYF SALSNEANLN EKPAGWLIFG
VTDKLPREII GSNYRLTPPG LDRLKEEIAR HTNHEMTFAG IHELMIDGKR VIMFETPPAA
RGIPTTWKSV AYGRIHESLG PLGLHEIEVI RRQAPLDDWS AKVCVGATLA DLDPEAIAFA
REKYKEKHQV FASEVDEWDD VSFLARAHVC RQGRITNAAI VLLGKSEAAH LLSPAIAHIT
WVLRDKDEVE IDYAHFGLPL ILAVDKIFSK IRNLTVRHIS GETLFPLEVT QYDPWVVREA
LHNCIAHQDY QQSARITVTE RPDSLVFTNR GDFIPGTVQS VIERDVPPDQ YRNPFLAGAM
VELKMIDTIG SGIKRMFRIQ RDRNFPMPDY DLGEAGVVKV TIPGRVIDER YTRMLIKRKD
LTLMDVITLD KIQKGYSITP EERTILRTKK LIEGRHPNLY VSESVAAETD TRADYIRKRS
FDRAHFKSLV VAYLKAYHEA NRAEIEDLLL DKVSDALNEE QKHHFIRDLL QEMRKDGTIM
PIGRTKAAKW VLVPDQVHDA
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