Gene Memar_0270 details

Gene Information

• Locus tag: Memar_0270
• ID: 4847151
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: -
• Start bp: 246363
• End bp: 248255
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640114941
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_001046186
• Protein GI: 126178221
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.525809
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTACCGCT GCTTTGACGA ACTGGACGAT GCCGTCGTCA TTCTTGACCG GGATAATACC 
GTTGTGCGGC TGAACCGATC GTTTTGCGAA ACGTTCGGGA TCGGCGATGA CGCTGCCCGC 
GGCATGGAGA TAGGCGACCT CATCGCCCGC CACCTCGCAC CGTTCTTCGA GGAGGGGGAC 
TCTGCCGGCC GGATGATCGA AGCACTCCGG CACCGGGAGG AGGTGACGCA CGAGACTCAC 
CGGATGCGAA CCTCCACCGG TGAGGTGCGT CACTTCTCCT TCTCGTGCCG GGTGATCTCC 
GGCGAGCCCT CCGCCGGGGA GAGGCTTGCA CGGTTCCGGG ACGTGACCCC CGAACGCGAC 
GAAGCAGTGC GGCGCGCCTG GGAAGAGAGC GCACGGGTCG GGGCCGAGTC GGTCTTTACC 
GCCGTCGGAG AACTGGTGCC CTACGGCTTC TGGGTATGCG GGCCGGACGG CAACGTGCTC 
TATCTTTCCG CCTCGTTCCT CGAACTGGTG GGAAGGACGA TCGAGGAGTG CCGGCGCTCC 
GGATGGCCGG AGTGCATCCC GCTCGAGGAT GCCGCAGCAG TGCGTTCCGA CTGGAGACGG 
TGCCTCGATA CGGGGTGCCG TTGGAATCGC GAGTTGAGGG TTCCGGATCC CGACGGGGAG 
TGCCGCACCA TCCTCTCCCG GGGAGCGCCT ATCCGTGACG GGGACGGGCA GATCGTCCTC 
TGGGCCGGAA TCAACCTCGA CATCACCGCA AGAAAACAGG CCGAGCGGCA CACCGCCGTC 
CGGGCGGCGC AGCAGGCAGC CATCGCGGAC CTCGGCCAGT TTGCTCTTGC AGGGGCGGAG 
CCCCCCGAAC TTATGAACGC CGTGGTCCGG ATGGTGGCGG AGCGCCTGGG AGTCGATTAC 
GCCAAAGTGC TCCGCTACCT GCCAGAGGAG GATCTCTTCA TCCTCGAAGC GGCGGTGGGG 
TTCGGCGGAG TCCGGGTCGG TACCGAGAAA GTGAACGGGG GAACCGATTC CCAGGCGGGA 
TACACCCTTC TCTCCCATGA GCCGGTGATC GTCGAAGACT TCGACGCCGA GACCCGGTTC 
CAGGGGCCGG CCCTCCTGCG AAACGAGGGG ATCCTGAGCG GCATCAGCGT CATTATCCAG 
GGTGACGAGG CGCCGTACGG GGTGCTCGGC GCCCATACCC GGACCCTGCG CAGGTTCACC 
CGGGACGACA TCAACTTCGT CCAGGCGGCC GCAAACGTTC TGGCACTGGG ATTCAAGCGA 
AAGGCGGCCG AGGAGGCGCT CAGCAAGAGT GAGGAGAAGT TCCGCCAGAT AGCGCAGCGG 
AGTTTCGACA TGATCTACAC CTGCTACCAC GACCGGGGGA TCACCTATAT GTCCCCGGCC 
GTGGCCCGCA TCCTCGGCTA TACCCCCGCC GAACTCATCG GCTGCAGGTG CCGTGACTAT 
GTCAGCCCCT TATCGCTCGC CGCATGGGAG GAGGGGCAGA AGAAGATGGC GAGAGGCGAA 
CCGACCGAAG GGCTCGAGGT CGAGTTCCGC CGCAAAGACG GGACGACGGC CTTCGTCGAG 
CTGAACGAAT CCCCGATCGT GGAGAACGGA AAGGTGGTCG GCGTCCAGGC GGTGGGAAGA 
GACGTCACCG AACGAAAACA GATCGACCAG CTTAACCGGC AGGCGTTCGA CCAGATCGAA 
CGGAACATCG AGCAGTTCGC CGTCCTCGGC GATCACATAC GCCAGCCCCT GCAGGTGATC 
CTCGGCATGG CCGACCTGAC CGACGATCCG AAGACCTCGG CGGTCATCCA CGACCAGGTC 
AGGCGGATCA ACGAGTACAT CAGGCAGCTG GACCGGGGAT GGGTGGAGTC GCGGGAAGTT 
CGCGCGTTCC TCCGGCGGCA CGACCGGGGG TGA 

 

Protein sequence

MYRCFDELDD AVVILDRDNT VVRLNRSFCE TFGIGDDAAR GMEIGDLIAR HLAPFFEEGD 
SAGRMIEALR HREEVTHETH RMRTSTGEVR HFSFSCRVIS GEPSAGERLA RFRDVTPERD 
EAVRRAWEES ARVGAESVFT AVGELVPYGF WVCGPDGNVL YLSASFLELV GRTIEECRRS 
GWPECIPLED AAAVRSDWRR CLDTGCRWNR ELRVPDPDGE CRTILSRGAP IRDGDGQIVL 
WAGINLDITA RKQAERHTAV RAAQQAAIAD LGQFALAGAE PPELMNAVVR MVAERLGVDY 
AKVLRYLPEE DLFILEAAVG FGGVRVGTEK VNGGTDSQAG YTLLSHEPVI VEDFDAETRF 
QGPALLRNEG ILSGISVIIQ GDEAPYGVLG AHTRTLRRFT RDDINFVQAA ANVLALGFKR 
KAAEEALSKS EEKFRQIAQR SFDMIYTCYH DRGITYMSPA VARILGYTPA ELIGCRCRDY 
VSPLSLAAWE EGQKKMARGE PTEGLEVEFR RKDGTTAFVE LNESPIVENG KVVGVQAVGR 
DVTERKQIDQ LNRQAFDQIE RNIEQFAVLG DHIRQPLQVI LGMADLTDDP KTSAVIHDQV 
RRINEYIRQL DRGWVESREV RAFLRRHDRG