| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_5428 |
|---|
| Symbol | |
|---|
| ID | 7119211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011758 |
|---|
| Strand | - |
|---|
| Start bp | 51152 |
|---|
| End bp | 52996 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643528115 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002424111 |
|---|
| Protein GI | 218533296 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.216663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTGG AACCCTTGTT CCACGTGAGG CAGGGCCTTG GGGCGATCCA GTTCGGCGGC
GACTCCGAAC GCGGCGCCGT GCGGTTCCGC CTGTTCTTCC CCGATGGCTT CGACCCGCAG
ATAGCGGCCA TCCGCGCGGT CGGATCGTTC CAGGACCGGC TCGGCGGCAG CGACTGGACC
CCCGCCGATC CTTTCCAGCT CGCCAGGACG AGTGCGCCAG GTGTCGGCAA CTTCTGGGAG
TTCACCTCCG GCGAACTGCC CGCCGGGTTC TACGAGTACA AGTATCACGT CACCTTCGTC
GACGGGACCA CCCGGGTCGT CACGGACCCT TGTGCCCGTT ACAGCGGAAC CAAGGACCAG
AACTCCGGCT TCGTGATCGG CGGCAGCCGA CCGGAGGACA ATACGGTCAC GGAGCTGGCG
CTGCGCAAGC CGCTGCGCGA CCTCGTCATG TACGAGGTCC ATCTCGACGA CTTCACGGAC
GAGTACAGGG GCACCCGCGC CCCACTGGAT GCTTTCGTGG ACAAGCTCGA CTACCTGAGG
GATCTCGGTG TTGAGGCGGT CCTGTTCATG CCGTGGACCG CGTGGCAGAA TAAGAGCTAT
GACTGGGGCT ACGCGCCTTT CCAGTACTTC GCCGTGGAAT ACGCTTACGC GAACGATCTA
GAGCGCCCAT CGGAGAAAAT CTCCTGGCTC AAGCGAATGA TATCTGAATG TCATGCGCGC
AAAATCCACG TCGTCATGGA CGGCGTGTTT AATCACTGCA GCGAGGATTT TCCATATAAA
TTTCTATACT TGGATGAAGC TGATTGTCCG TATACTGAGA GATCTTTTGG TGGCACTTTT
CCTGGGCTGC AGGACTTGGA TTTTGGAAAT GAATGCACGC AATCATTCAT CCGGGATGTA
TGTCTGTACT GGATATCAGA ATTCAAAATC GACGGAATTC GATTCGACAA CACGGTAAAT
TTTTATGTGG CCGGCAATCC TCGCGGTATT CCGGAGCTGC TGGGCGACAT TCATACGTAC
GCATCCGCGA ACGGTCGGCA TAACTTCTCG ACCACGCTTG AACACATTGA TATGTCCGCC
GCGGACGTCG TGAATCGCAC GCTGGCCACG AGCTACTGGG ACAATGCGCT GTACGGGGAG
TGCTTCAACC ATCTCTGGTG GGGAAGAATC GGAGCGAGCT ACCTCGGGGC GTTGAACAAC
TCCCGCTTCC TTGCCGGGGT GGAAAAAGTC GCCACCAGCT ATCTCGGCAA CCACGACCAT
TCTGCCGTCG CCTGGCAGGC CGGCGCGACC GACAATACCG GCGCCCTCCG GTGGTACCGC
ACGCAACCGC ACGCCATCGC CCTCCTGACG AGCAGCGCGA TGCCGCTGAT CGCCAGCGGC
CAGGAGTTCG CGGAGGACTA CTGGATCCCG GAGGATGACC ACTCGACCGG ACGGCGCGTG
CGACCGCGTC CGCTGAGGTG GGGCGCGACG AGGGATGCTT ACGGCGCCAG GATGTTGGCA
CTCTACAGGC GCCTGATCCA GATCCGTAAG GAACACCCGT GTCTCCGGTC GCGCAACTTC
TATCCAACGG AGTGGTCTGG CCCGCAACGC GACGGGGACG GCTTCGGCGT CGACGTCGAG
CAGGGGCTCG TCGTCTATCA CCGCTGGGGC GAGGGAGAGC ACGGCCGGCT AGAGCGCTTC
ATCGTCGCCC TGAACTTTTC CGACCAGGAC CGGCAGGTCA CCCTCTCATT TTCCGAGAAC
GGCCAATGGG CGGACCTGCT GGCCGGAGGC AGCGTGCGCG TCACAGGTTA CCGCAGCGAG
GTGACGCTGG AGTCCAATTG GGGCCACATC TTTCTCTTGG GCTGA
|
|---|
| Protein sequence | MALEPLFHVR QGLGAIQFGG DSERGAVRFR LFFPDGFDPQ IAAIRAVGSF QDRLGGSDWT
PADPFQLART SAPGVGNFWE FTSGELPAGF YEYKYHVTFV DGTTRVVTDP CARYSGTKDQ
NSGFVIGGSR PEDNTVTELA LRKPLRDLVM YEVHLDDFTD EYRGTRAPLD AFVDKLDYLR
DLGVEAVLFM PWTAWQNKSY DWGYAPFQYF AVEYAYANDL ERPSEKISWL KRMISECHAR
KIHVVMDGVF NHCSEDFPYK FLYLDEADCP YTERSFGGTF PGLQDLDFGN ECTQSFIRDV
CLYWISEFKI DGIRFDNTVN FYVAGNPRGI PELLGDIHTY ASANGRHNFS TTLEHIDMSA
ADVVNRTLAT SYWDNALYGE CFNHLWWGRI GASYLGALNN SRFLAGVEKV ATSYLGNHDH
SAVAWQAGAT DNTGALRWYR TQPHAIALLT SSAMPLIASG QEFAEDYWIP EDDHSTGRRV
RPRPLRWGAT RDAYGARMLA LYRRLIQIRK EHPCLRSRNF YPTEWSGPQR DGDGFGVDVE
QGLVVYHRWG EGEHGRLERF IVALNFSDQD RQVTLSFSEN GQWADLLAGG SVRVTGYRSE
VTLESNWGHI FLLG
|
|---|
| |