| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_2063 |
|---|
| Symbol | |
|---|
| ID | 5409772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 2141395 |
|---|
| End bp | 2142162 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640869308 |
|---|
| Product | undecaprenyl diphosphate synthase |
|---|
| Protein accession | YP_001405220 |
|---|
| Protein GI | 154151602 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.494049 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCTCC GCGGGCTCCT CGAACCCCTG TACGAGCGCT ACCTCCTGAT GCAGTGCACG
CAGATCCCCA CCCATGTGGC TATCATCCAG GACGGCAACC GGCGGTTTGC CAAAGAGATC
GGTATCGATA CGGCCCAGGG GCACCGGGCC GGGGCGGACA AGACCGAGGA GATGCTGGAC
TGGGCCCATG AGTTAGGTAT ACGGTTTGTG ACCATCTACT CGTTCTCCAC GGAAAACTTC
CACCGCACCG AAGAGGAGAT ACGGGAGCTC TTCCGGCTCT TCAAAGAGAA GTTCATCAGC
ACAATCTCAG ATGAAAGGGT GCACCGGTAT AAGATCCGCG TCCAGATGCT GGGTGACCGC
TCGCTTCTTC CCGAAGACCT GCGGGCCGCT GTCGAGGCCG CAGAGGAGGC CACAAAGGAT
TACGACGGGT TTACCCTTAA TGTGGCGCTT GCGTACGGCG GGAGAAATGA GATCGTGCTT
GCCGCCCGGG AGATTGTTTC GGCCGTCCGT GAGGGAAAGA TCGCTCCTGA TACTATAGAC
CAAAAGATGG TAGAATCCCA CCTCCACGAG GGAAAGGAGA TCCCGCCGGT GGATCTTATC
ATCCGGACCG GGAACGAATA CCGCACCTCC AACTTCTTGC CCTGGCTTGC AAACGGCCAT
GAATCCGCGG TCTACTTCTG CGCCCCGTAC TGGCCGCTCT TTCGCAAAAT TGACCTTCTC
CGCGCTATCC GTATCTATGA TCAGCGGGTG AGCGCGAAGG CACACTGA
|
|---|
| Protein sequence | MTLRGLLEPL YERYLLMQCT QIPTHVAIIQ DGNRRFAKEI GIDTAQGHRA GADKTEEMLD
WAHELGIRFV TIYSFSTENF HRTEEEIREL FRLFKEKFIS TISDERVHRY KIRVQMLGDR
SLLPEDLRAA VEAAEEATKD YDGFTLNVAL AYGGRNEIVL AAREIVSAVR EGKIAPDTID
QKMVESHLHE GKEIPPVDLI IRTGNEYRTS NFLPWLANGH ESAVYFCAPY WPLFRKIDLL
RAIRIYDQRV SAKAH
|
|---|
| |