| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1797 |
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| Symbol | secD |
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| ID | 5411976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | + |
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| Start bp | 1876259 |
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| End bp | 1877719 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640869032 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001404956 |
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| Protein GI | 154151338 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0601908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.730674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCCGG AACGGATCAA GGACATGTTC AGGGACTGGC GGGTTTTGGT TCTCATTACC
CTTCTCGTCC TCGCGATCAT CGCCATCTAC CCGCACTTCG ACAGTAATGG CAACCTCACC
ACCAATCTCC AGTATGGCCT CGATCTCCAG CAGGGAGCCT GGCTCCAGCT TGAATTCAAG
GCTGAAGTGG TAGGTTTTAC CACAACGGAG CCAGTCGATA CGTTCGTGAC CAACCTCTCA
AAAAGTCTTG ACACGGATGT GGTTCTGGTC GATGCAAACC ATGTCGAGAT CCGGAAATCC
TACACGCAGG ACGAACTTGC ACCGTATTTT GCCGCTGAAG GAGGGACCAT TGTCTCGTAC
CAGCCCGGCA TCTCCTCGAG TACAGCAGAC CTGGTAAAAC AGATCCTCGA GCAGAAGATC
AATGCGATGG GCACCAAAGA TGCAAAGGTC AATACTCTCA CCGGGATGAA CAACGTGGCC
CGGTACGTGC GCGTGGAGAT GGCCGGCGTT GACATGAACC AGGCCCAGCA GATCGTGGGC
AAGCAGGGCA AGTTCGAGAT CCGTATCCAG ACTACAGGAA ACCAGTCCGA GCATGTCCTC
TTTGGAGATT CAATAACCAG TGTCCAGTCA CCCAGCCAGC AGCCGGCGGG CAGCGGCGAC
TGGGGGGTTG GCTTTACCTT AAGCTCAGAC GGCGCAGCCA CATTCCAGAA CGCGGCGATC
AAGTACGGTG CCACCACCGA CCCAAGCAAC CACAAGCTCA CCATGCTGCT CGACAACCAG
ACCGTGTACT CGGCCCCGCT TTCCCAGCAG CTGGCAGCAT CGCTCGTGTC TGAACCCACT
ACCCAGCTCT TCGCATCTAC CGGCTCCGGT ACATCCGGTG AGCAGCAGGC AACCGACCTT
GAAATCCAGC TTCGGGCCGG GGCACTGCCG GTCGATGTCT CAGTTGCCGG GTCAGGTTCG
ACTTCTGCGT CGCTTGGCCA GCACTACATG GAGATGTGCC TGCTCGCGGG TATCCTTGCG
CTGATCATGG TCGCATTTGT GATCTTCTAC CGGTACCGCG AGCCGAGGAT CGTGCTGCCC
ATGGTGCTGA TCAATGCATC AGAGATCGTG ATCCTGCTGG GGTTCATCAG CGTGATCAAG
TTCCAGATGG ACCTGCCGAC AATCGCCGGT CTCATTGCAG TGCTCGGGAC CGGTATCGAC
CAGCTGGTCG TTATTACCGA TGAGATCCTC CACGAAGGGT TGGTTCCCTC CCCCAATGTA
TACTTAAAAA GACTGGCCCG GGCGCTCACC ATTATCATGA TCGCGGCGGC CACGGTGATT
ATCGCGATGC TGCCGCTCGC ACTTATGGAT CTCTCCACGC TCAAGGGATT TGCCATCATC
ACTATCATGG GCGTCATCGT GGGCGTCGTG GTGACCCGGC CGGCTTACGG CAGGATCATC
ATGGAGATCC TCTCCGAATA A
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| Protein sequence | MKPERIKDMF RDWRVLVLIT LLVLAIIAIY PHFDSNGNLT TNLQYGLDLQ QGAWLQLEFK
AEVVGFTTTE PVDTFVTNLS KSLDTDVVLV DANHVEIRKS YTQDELAPYF AAEGGTIVSY
QPGISSSTAD LVKQILEQKI NAMGTKDAKV NTLTGMNNVA RYVRVEMAGV DMNQAQQIVG
KQGKFEIRIQ TTGNQSEHVL FGDSITSVQS PSQQPAGSGD WGVGFTLSSD GAATFQNAAI
KYGATTDPSN HKLTMLLDNQ TVYSAPLSQQ LAASLVSEPT TQLFASTGSG TSGEQQATDL
EIQLRAGALP VDVSVAGSGS TSASLGQHYM EMCLLAGILA LIMVAFVIFY RYREPRIVLP
MVLINASEIV ILLGFISVIK FQMDLPTIAG LIAVLGTGID QLVVITDEIL HEGLVPSPNV
YLKRLARALT IIMIAAATVI IAMLPLALMD LSTLKGFAII TIMGVIVGVV VTRPAYGRII
MEILSE
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