| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1253 |
|---|
| Symbol | |
|---|
| ID | 5412082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 1275854 |
|---|
| End bp | 1277893 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640868481 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001404414 |
|---|
| Protein GI | 154150796 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0417] DNA polymerase elongation subunit (family B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGATCC TTGATTCTGC GTACCGGGAC GGTGGCGTAG ACCTCTGGGT AAAGGAGGGG
GGCACTGTAC AAAAGATCCA CACACCCTAT GACCCGCCCT TTTACGTCTC TTTCCGTGAT
CCGACAGCCT GCCACGAGCT GATCGCAGCG CTGGAAACAC AGTACGGGGC AGAGAAGTGC
GCCATCCTCA CGATATTCGG TGATGTCCCG GGGTATGCCA TCCATGCGGG GCGGGATGTG
GCCGAAGCGA TCGAGCGGCA GGCGCAGTAC GACACCGATC TTTTCAATGT GGACGTACGC
CGCGATCAGC GTTTCATGGC AGAGCGCGGG ATCGTCCCGT GCACCGGGAA TGACGGGGAC
CGGTTCTCCC CTGATGTTGC GCACGATCTC ACAATCCTGG AACTCCGTAC CCGGGGCAAC
CCGGTCGTTT CCGCCCCGTC ACTGGAGTTC GATCTGGAAT GCAGCGGGGA AACCTGCAGG
CTGGACGGAA AGGCCGGGGA TGTGCTCGCA GACCTTGCCG GGCAGATTGC ATCACATGAT
CCCGATATTA TTCTCATGCC GGATGCCGAT CTGGCCGTAC CCGGTCTCCT TACCCTTGCC
CGGCAGTACG GAATCACTGT TCCCTTTTCC CGGAACGGGA AGTACCGCAA CCAGAGTGCA
CGGTCGTACT GGAGCTACGG GCGCATGGAA CACAAGGGGG CGGCACTTGT CCCGGAGGGG
CGCATCCTCA TTGACACGGA GCAGTCGTTT GCATATCATG CCGGCGGACT TTCCGGGATG
CTCATAGCAT CCCGGCTTGC CGGCATCCCG CCCGGTCCGG CGTCCCGGCT TACGCCCGGG
ACACTGATTA GCAGCTACGA GATCCGGGAA GCCCTCCGTC AGGGGATTGC GGTGCCGTTT
CGCAAGAACG AGCCCGAGCA GGTACGAAAG ATCGCCGAAC TCCAGGCCGC AGACCGGGGC
GGTCTGATGT TCCAGCCGGT ACCGGGGACA TATGAGTCAG TGGATGAGAT CGATTTTACG
TCCCTGTACC CAACGATTAT TGTAAATGAG AATCTCTCTC CTGAAACCCT TGGTCATAAC
GATCGGCCCG GGTTTTTGCC CGCCGTGCTT GATCCCGTGA TCGGGTTGCG CCGTACCACA
AAAAGGCAAA AAAAGACCGA TCCCCGGCTG CGGGGCCCGG ATGCGATCCT CAAGTGGATG
CTTGTGACCT GTTTCGGGTA CACGGGGTAC AGGAACGCGA AGTTCGGGAG GATCGAAGTA
CATGAGGCGA TCACGGCAGC ATCCCGGGAG ATCCTGCTCC GCACCAAGGA GATTGCAGAA
GAGATGGGAT TTACCGTCCT CCACGGGATT GTGGATTGCC TCTGGGTGCA GGGGAACCTG
CCAATCGAGA CGCTCCGGGA GCGGATCGAA CGGGAAACCC GTTATCCCAT TGATGCCGAA
CATTTCGACT GGATTGTCTT TTTGCCGCTG GCAGACGGCT TTGGCGCGTA CAACCGGTAC
TACGGGAAAC TGTCAGATGG GCACATCCGG GTGCGGGGAA TTGCAGCACG CCGGCATGAT
ACGCCACCAT TCATAAAGGA GGTGCAGTGC CGGATGCTTG GTGTCATGAA GCGGGCGGCA
ACCATTGCGG AGCTGGAAGA GACAAAAGAG GAAGCAGAGC AGATCTTTCG GGAGGCGATT
TTGGCCCTCC CTGCCGCAGA CCCTCAACAG ATGGCAATCG GCCGCCGGAT CAGCCGGCTT
GTGTACCGCC ACCGCTGCCT GGAAGGAGCT GCCGTTCAGG CGTACCGTGA CCAGGGGATC
GAGCTTTCGC CCGGTATGCA GATCCGGTAC GTGGTTGAGG ATGCCCGGCA TTACCGGGTG
GTGCCGGCCG GGTCAGCGAT CTCGTTTGAT ACCGCATTCT ACCGGACGCT GCTTGAACGG
GCAGGGGAGG AGATCCTTGC TGCATACCCG TCCGCAGCGC CCGGGAAGAA GATGCCTGTC
AGGTCCGGTA ACGTACCGGG CGTTAAAAAA CCCGGGACAG GAAACGCGAC ACTGTTCTGA
|
|---|
| Protein sequence | MWILDSAYRD GGVDLWVKEG GTVQKIHTPY DPPFYVSFRD PTACHELIAA LETQYGAEKC
AILTIFGDVP GYAIHAGRDV AEAIERQAQY DTDLFNVDVR RDQRFMAERG IVPCTGNDGD
RFSPDVAHDL TILELRTRGN PVVSAPSLEF DLECSGETCR LDGKAGDVLA DLAGQIASHD
PDIILMPDAD LAVPGLLTLA RQYGITVPFS RNGKYRNQSA RSYWSYGRME HKGAALVPEG
RILIDTEQSF AYHAGGLSGM LIASRLAGIP PGPASRLTPG TLISSYEIRE ALRQGIAVPF
RKNEPEQVRK IAELQAADRG GLMFQPVPGT YESVDEIDFT SLYPTIIVNE NLSPETLGHN
DRPGFLPAVL DPVIGLRRTT KRQKKTDPRL RGPDAILKWM LVTCFGYTGY RNAKFGRIEV
HEAITAASRE ILLRTKEIAE EMGFTVLHGI VDCLWVQGNL PIETLRERIE RETRYPIDAE
HFDWIVFLPL ADGFGAYNRY YGKLSDGHIR VRGIAARRHD TPPFIKEVQC RMLGVMKRAA
TIAELEETKE EAEQIFREAI LALPAADPQQ MAIGRRISRL VYRHRCLEGA AVQAYRDQGI
ELSPGMQIRY VVEDARHYRV VPAGSAISFD TAFYRTLLER AGEEILAAYP SAAPGKKMPV
RSGNVPGVKK PGTGNATLF
|
|---|
| |