Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_0313 |
Symbol | |
ID | 5410848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | + |
Start bp | 301688 |
End bp | 302893 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640867529 |
Product | PKD domain-containing protein |
Protein accession | YP_001403478 |
Protein GI | 154149860 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATCCCG CAGCCTGCTG GGGTCATTGG TCCTATGTTA TGCACCCGGA TACGATACTA ACCAGAAGAT GCGGAAAAAT AATCCGTGGC ATTTTTATTG TCGTTCTCAT CACTTCTCTT CTTTTCTTCT CCCCGGCGGT TGCCGGAGAT CCAAAACTCA CGATCGTCCT GACCGCACGA ATTGTTCCTG TCTCATCAGC CTGGTTTGCC ACAAACGTCA CGGAGGGACC TGCACTGCTT CCGGTAGCAT TTACCGACCA GTCCACAGAC ATGCCGGTAT CCTGGAAATG GGACTTCGGG GACGGGGCTG TGGATACCGT CCGGAACCCG GTGCACATCT TCGAGACCCC GGGCATATAC ACGGTTCTGC TGACCGTTGG TACAATGTCC GGCAATTCGT CACGAGCAGC ACAAATTATC GATGTGGGTG CGCCGCCGGA TGCGCTGGGA TCCAATACCC TCAGGACATC AGCGATCGGC CCGGGAACAA CAACGACTCT TGACTTTTCA GCGCAGGCCG GGACGAGTAT CGATATAACG ACAAACAACA GCGTACAGGC CGGTACACCG GTCACCGTGA CCGAATATTC CAGCCCGCCG TTTCCAGAAA TGTCACTTCC GGCATTTACT GCTGCAGGCA GGTACATTGC AATCTCCGCA CAGGGGCTGG AAGCAAATGT CAGCTCGGTA ACCATAACGA TGCAGGAACC GGCCCCCCTC CCGGCAGGTG TCACCGAGGC AAACCTTGTA ATCGAATTCT TCGACCCTGC AACCGACACC TGGACCGTTC TTCCCTGTAC CCTCGATACC ACCAGCCACA CGATATCGAC CACATCCACG CATCTGAGCG CCTACGGGCT GTTTGCATCA CCAGTGACTG CAGCACCCGG GAGTGGCAGC TCTTCTGGCG CAAGTGAAGG GGGCTTTCTC TCCGGAGGGA GTTCCTCCGG CGGCAGTGGC AGTGTAGGTC TCCTGCAATT TTTCCAGCTG GCGCCTGTCC GGGCTCCTCT GACACCGGCA GGAATTCATG TGAACACTCC GGCAGTAGTA CCTGTATCTG CCCAGAAGGC ACCGGTCCAG ACTCCTGCAG CGGGAACATC GGCACAGACT TCACCCGGGC TTCCCCTCAT GGGAATAGCA GTTGTCGTGG CAGTACTTGC CATAACCGGT GTTGCACTGC TGGCATTTGC CCGGAGGAAC ACATAA
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Protein sequence | MDPAACWGHW SYVMHPDTIL TRRCGKIIRG IFIVVLITSL LFFSPAVAGD PKLTIVLTAR IVPVSSAWFA TNVTEGPALL PVAFTDQSTD MPVSWKWDFG DGAVDTVRNP VHIFETPGIY TVLLTVGTMS GNSSRAAQII DVGAPPDALG SNTLRTSAIG PGTTTTLDFS AQAGTSIDIT TNNSVQAGTP VTVTEYSSPP FPEMSLPAFT AAGRYIAISA QGLEANVSSV TITMQEPAPL PAGVTEANLV IEFFDPATDT WTVLPCTLDT TSHTISTTST HLSAYGLFAS PVTAAPGSGS SSGASEGGFL SGGSSSGGSG SVGLLQFFQL APVRAPLTPA GIHVNTPAVV PVSAQKAPVQ TPAAGTSAQT SPGLPLMGIA VVVAVLAITG VALLAFARRN T
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