Gene Maqu_3792 details

Gene Information

• Locus tag: Maqu_3792
• ID: 4655213
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Marinobacter aquaeolei VT8
• Kingdom: Bacteria
• Replicon accession: NC_008740
• Strand: +
• Start bp: 4207781
• End bp: 4209763
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 639813769
• Product: VacB/RNase II family 3'-5' exoribonuclease
• Protein accession: YP_961048
• Protein GI: 120556697
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCAACG CCGACGCTCT CAATCAGTTG CGCCAGCTGA AAACCGACAT CAAACAGAAC 
AAGGTGGTCT TCCCCGGTAC CGTCAAGTCC ACCAACGGGC GTTTCGGCTT TGTGGCCCTG 
GATGAAGGGC GGGATGTGTT TCTGCCTCCC GAGGAAATGC AGAAAGTCCT GCCCGGTGAT 
CGGGTCAATG TCACCGAACA CGAAGTAGAG AAAGGCAAGA CCCAGGGCGT CGTCGACGAG 
CTGCTGGAAT CGCACCTGAC CACCTTCGTG GGCCGCTACC TGATCAAGGG CAAAGGCCAC 
TTTGTGGCAC CGGAAACCCC GGGCATCAAC CGCTGGATTT TTATTCCGCC GAAAGAACGC 
AAGGGCGCCC AGCCGGATGA CTTCATCTAC TGCCAGATTC ACCGCCATCC AATCAAGGAC 
GGCAAGGGCC AGGCGAAGGT ACTTCGGGTG ATCGGCAAGG CTGGTGAGCC GGGCATCGAA 
CGGGCCTTCA CCCTGGCCAA CTTCGACTTG GCCGATGCCT GGCCGGAAGA AGTGCAGACC 
CAGGCCGATG CCCTTACCGA GGAGTCGATT ACCTCCCACC GCGAGGGCCG GGAAGACCGC 
ACCGAGCAGC CCTATGTGAC CATCGACAGT CCGGGCACCC AGGATATGGA CGATGCCCTG 
ATGGCAACCC CGAATGCCAC CGGCTGGACC CTGTCCATCG CCATCGCCGA TCCGACCGCG 
ATGATCGAGC CGGGCAGCCC GGCCGAAGAA GAAGCCTTCA ACCGTGCCAC CGCCATCTAT 
TTCCCGGGTG AGCCACTGCC GATGTTACCG GACGCCATCA GCACACGCCT GTGCTCGCTG 
ATGCCAGAGG TGCCGCGATT GGCCCTGGTG TGCGACCTGC AGGTGAACAA CGACGGCAGC 
CTGGGCGACT ACAGCTTTCA TCAGGCCGTG ATCCGCTCCC AGGGCAAACT CAGCTACGAG 
CTGGTGTCGC ATCTGATTGA GGGTCGCGAA GACGACGAAA TCAAGGCATT ACCCGAAGCG 
GTCGCCAACA GCCTGGATCA GCTGCATCAG GCGGCAACCG CCCTGCGCAA ATGGCGCTCT 
GAGCATGCAC TGCTGAGCAA TGATCGCCCG GAATTCCGGT TGCGTCTGGA CGAGAACAAG 
CGAATCCGGG TGATAGAACC GGCGGTGCAG AACGAAGCCC ACCGTCTGGT GGAAGAATGC 
ATGGTCGCGG CCAATCGTTG TGCGGCCGAT TTCCTGGAAA AGCAGGGGCA AGGCCTGTTC 
ATTCAGCATC CGGGGCTGCG GGACGACCGC GCCGACAATA TCCGTAAACT GCTGGAGGGC 
TACGCCCCGC ATCTGGCCGA GCTGGATGCC ACCAGTGCCG AAGGCTTCAA GGCGTTGATG 
AAGCACACCG ATGGCCTGCA GGCCGATGTG CCGGTCAAGT CCATTCTCTC GCGCCAACTG 
GCCCGGGCCG AACTGGGGTT CGAGCCTGCT CCGCATCAGG GTATGGGACT GGCGGCCTAC 
ACCACCTTTA CCTCACCGCT GCGCAAGTTC TCGGACTTCT ACGTGCACCG TCTGATCAAG 
GCCGCACTCT GGGATCAGCC CATCAAGGCC CTGAACCCGC AGCAGCTTGA AAGTCTCCAG 
ACTACCCAGT TCCGCGCCCG CATGGCCGCC AACACCCTGG AGGCCTGGCT CAAGAGCGAT 
TACGCCAAAG GCCTGCCGGC AGATCCGATG GAAGGCACCA TTACCCGCAC CATGCCATCG 
GGCTTTTTCG TCCGCCTGGA TTGCAACGGC CTGGAAGGCT TTGTCAGCTG CAAGGATCTG 
GAGGGCAAAT TCAGCTTTGA TCCGGTTACG TTGCGCCTGG TGCACAACAA GAACGGCCGG 
ATTTTCCAGC TGGACCAGCG GGTAACCGTG AGCTTTTCCG GTGTGGACGA AGAGCGTCGG 
CAGATCAACT TCAAACTGCT CGAGGCCGAG GACATTAATC CCGGAACCGA CGACAAGGGT 
TGA 

 

Protein sequence

MLNADALNQL RQLKTDIKQN KVVFPGTVKS TNGRFGFVAL DEGRDVFLPP EEMQKVLPGD 
RVNVTEHEVE KGKTQGVVDE LLESHLTTFV GRYLIKGKGH FVAPETPGIN RWIFIPPKER 
KGAQPDDFIY CQIHRHPIKD GKGQAKVLRV IGKAGEPGIE RAFTLANFDL ADAWPEEVQT 
QADALTEESI TSHREGREDR TEQPYVTIDS PGTQDMDDAL MATPNATGWT LSIAIADPTA 
MIEPGSPAEE EAFNRATAIY FPGEPLPMLP DAISTRLCSL MPEVPRLALV CDLQVNNDGS 
LGDYSFHQAV IRSQGKLSYE LVSHLIEGRE DDEIKALPEA VANSLDQLHQ AATALRKWRS 
EHALLSNDRP EFRLRLDENK RIRVIEPAVQ NEAHRLVEEC MVAANRCAAD FLEKQGQGLF 
IQHPGLRDDR ADNIRKLLEG YAPHLAELDA TSAEGFKALM KHTDGLQADV PVKSILSRQL 
ARAELGFEPA PHQGMGLAAY TTFTSPLRKF SDFYVHRLIK AALWDQPIKA LNPQQLESLQ 
TTQFRARMAA NTLEAWLKSD YAKGLPADPM EGTITRTMPS GFFVRLDCNG LEGFVSCKDL 
EGKFSFDPVT LRLVHNKNGR IFQLDQRVTV SFSGVDEERR QINFKLLEAE DINPGTDDKG