| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maeo_1070 |
|---|
| Symbol | |
|---|
| ID | 5326793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus aeolicus Nankai-3 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009635 |
|---|
| Strand | - |
|---|
| Start bp | 1113202 |
|---|
| End bp | 1115520 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 640788466 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_001325259 |
|---|
| Protein GI | 150401493 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.894632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTTA TATCTCATCC TAATCCTGAC TATCCACTAA AAAAACACCT CATAATGACA
AAAAATAGGG CATTATCTAA ATACAATTCT CTAAAATTAA AATACTTTAA TAATGCTATT
ATAAAGGATA TTTTAAAAAT AATATGCTTA TCTCATGATT TTGGAAAAAC TACAACCTAT
TTTCAAAAAT ACATAAGAAA TGAGAAAATA GAAAAAAGAA TATTAAAAAG ACATTCGGAA
ATATCGTTTG TTTTAGCAAA TTATGTTATA AAGAGCTATT TAGAATCAAA AAATATAGAT
AACAAATATT ATCAAATATT TTCATTGTGT ATAAAAAAGC ATCATGGCAA TTTATCGGAG
CTCCTAAATG ATGCCTCCAT ACAGGATGAA GACATTTTAA AAAAACAGTT TGATGAATTA
AATTTCAATT TTATAAACAA TATATTAAAT GAAAATAATT TCCCAAAATT GAATTGTGAT
ATTGAGGAAC TTATTTCAGA AGTTGAAGAA TTGGAATATC TCTGTGATGA CTTAAAATAC
GAAATCAACG ATGAAATGAA AATTGAGACA TATTATTTAT ATCAATATTT ATTTTCTCTA
TTAATATCAT CGGATAAAGA GGATGCCATA TTTAGACAAA ATACAGAACT CGGAGTTTCT
AATGAAATAC CTTCCGACAT TATTGATTAT ATCGAAAATA AACCTAAAAT CAAACCAATA
GACCATCTAA GAACAGAAAT ATTTTATAAA ATTTCAAATA AAGTACATAA TTTAGATTTA
AATCAGAAAA TATACACATT AAACGCTCCA ACAGGAATTG GAAAGACTCT TACTATTTTT
AATTTTGCCC TAAAATTGTC AAATCGGATA AAAACTGAAA AAAATATCGA TATGAAAATA
ATATACTGCC TTCCATTTTT AAGTATCATT GACCAAAACT ACAAAGTTTT AAATGAAGTT
TTAAAAAATC CTCCTTCAAA TATTCTTTTA AAACATCACC ATCTGTCAGA TGTGGTATAT
TGGCATGAGA AAAATGGGGA AGAGAATATA CTGGATGAAA ATAAATCACT TCATTTAATG
GAAACATGGA GCTCCAAAAT AATTACAACA ACATTTATGC AGTTGTTTTA CAGCATATTT
TCAAATAAAA ACAGCGACTT AAAAAAGTTC AGCAGCTTAT CTAACAGCAT AATTATATTG
GATGAAATAC AGTCCATTCC CCACAAATAC TGGCATTTAG TAAATAAAAT ATTCAGATTT
TTGGCAGAGG AGTATAATAT ATATTTTATA CTTACAACAG CCACGCTACC TATGATTTTT
GATAAAAATG AATGCGTAGA ACTTCTTGAC GATAAAGAAC ATTATTTTTC AAACTTAAAT
AGAATAAAAA TGAAAATACA CAATGAACCT ATGGATTTAA CTGAATTTGT AGGCGTATTA
GACGAAGACA TAAACAACAA TCCAGATAAA GATTTTTTAA TAGTATTGAA TACCATAAAA
TCATCAAAAG AAGTTTATGA CTTATTAAAG GAATATAACT ATGAAAATAC TGAATATTAT
TACTTATCCA CCAATATATA TCCAAAGGAA CGATTAAACC GTATTGAGAA GATTAATAAA
AATAATAAAA ACAATAACCG AAAAATCATA GTATCCACCC AGTTAATCGA AGCAGGAGTG
GATATAAGCG TTGATATTGT GTATAGGGAC ATTGCACCAT TGGACTCAAT AAATCAAACT
GCGGGGAGAT GTAACAGACA TGGAGAAGGA ACAGAACAGG GAATTATAAA CATAGTCAAA
CTAATCAATG ATAATGGTCA TCCATTCAGC AGGTATATTT ATAACGGAGC TCTCATTTCA
AAGACTGAGG AATTATTAAA AAATTATGAT GAAATTGAAG AAAGGGAGCT CCTAAATATT
AACAATTGTT ATTTTAAAAA ATTAAAAGGA TATGATGATT CATCGAGGGA GCTCCTAGAA
ATTATTAAAT CATTCAAATA TAATAATGTA CCTAAAAATT TTAAATTAAT TGACGAAATA
CCACAAATAA ATCTGTTTGT GAATGTTGAA GATGATGCAA AAAAAGTATA TGCTGAATAT
GAACGGATAA AAAGTATAAA AGACCCATTT AAAAGAAAGA GGGAATTTTT AAAAATAAAA
AAGGAATTTT ATCAGTACAT AATATCAATC CAAAAACATG CAATCAAAGG AAAAGATATT
TTAATAGATG AAAATAAAGA TATAACCATA ATTGATAATA AATATTATAA TATAGAGACA
GGATTTAATG CTGTCGAGGA TAATATGTTA ATATTATGA
|
|---|
| Protein sequence | MELISHPNPD YPLKKHLIMT KNRALSKYNS LKLKYFNNAI IKDILKIICL SHDFGKTTTY
FQKYIRNEKI EKRILKRHSE ISFVLANYVI KSYLESKNID NKYYQIFSLC IKKHHGNLSE
LLNDASIQDE DILKKQFDEL NFNFINNILN ENNFPKLNCD IEELISEVEE LEYLCDDLKY
EINDEMKIET YYLYQYLFSL LISSDKEDAI FRQNTELGVS NEIPSDIIDY IENKPKIKPI
DHLRTEIFYK ISNKVHNLDL NQKIYTLNAP TGIGKTLTIF NFALKLSNRI KTEKNIDMKI
IYCLPFLSII DQNYKVLNEV LKNPPSNILL KHHHLSDVVY WHEKNGEENI LDENKSLHLM
ETWSSKIITT TFMQLFYSIF SNKNSDLKKF SSLSNSIIIL DEIQSIPHKY WHLVNKIFRF
LAEEYNIYFI LTTATLPMIF DKNECVELLD DKEHYFSNLN RIKMKIHNEP MDLTEFVGVL
DEDINNNPDK DFLIVLNTIK SSKEVYDLLK EYNYENTEYY YLSTNIYPKE RLNRIEKINK
NNKNNNRKII VSTQLIEAGV DISVDIVYRD IAPLDSINQT AGRCNRHGEG TEQGIINIVK
LINDNGHPFS RYIYNGALIS KTEELLKNYD EIEERELLNI NNCYFKKLKG YDDSSRELLE
IIKSFKYNNV PKNFKLIDEI PQINLFVNVE DDAKKVYAEY ERIKSIKDPF KRKREFLKIK
KEFYQYIISI QKHAIKGKDI LIDENKDITI IDNKYYNIET GFNAVEDNML IL
|
|---|
| |