Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MCA0813 |
Symbol | sqs |
ID | 3102259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylococcus capsulatus str. Bath |
Kingdom | Bacteria |
Replicon accession | NC_002977 |
Strand | - |
Start bp | 855386 |
End bp | 856474 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637170019 |
Product | squalene synthase |
Protein accession | YP_113313 |
Protein GI | 53804819 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.493188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGGAA CACCCCCCTC ACAGCCCGCC AGACATGAGC ATCTGTCGGA CGACGAATTC CAGGCCCATT TCCTGGACGG CGTATCCCGT ACTTTCGCTT TGACGATCCC GAGGCTGCCG GAAGGTTTGG CCCGTCCGGT ATCCAACGGC TACCTGCTGT GCCGTATCGT CGACACCATC GAAGACGAGG TGGCGCTGAC GTCGACCCAA AAGCGGCGAT ATTGCGAGCA TTTCGCCCGG GTCGTCGCCG GAACGGCACC CGCTGCCCCG CTCGCCGACG AACTCTTTCC ACTGCTCTCC GACCAGACCC TGGCCGCCGA GCGGGAGCTG ATCGCCGCCA TTCCGCGCGT CATCAGCATC ACCCATGGCT TCGCCGCGCC GCAGCAGGAG GCACTGGCCG AGTGCGTGGC CACGATGTCT AGAGGAATGG CCGAGTTTCA GGACAAGGAC CTGCGGCACG GTCTCGAGGA CCTGCGACAG ATGGGCGATT ACTGCTATTA CGTCGCCGGC GTGGTCGGAG AAATGCTGAC TCGGCTGTTC TGTCACTACT CCCCGGAAAT CGCCGCACAT CGGTCGCGGC TGATGGAACT CGCGGTGTCC TTCGGACAGG GACTGCAGAT GACCAACATA CTGAAGGACC TGTGGGATGA CCATGCGCGC GGCGTCTGCT GGCTGCCGCA GGAGGTGTTC ACGGAATGCG GTTTCTCCCT CACCGAGCTC CGGCCGCACC ACGCCAACCC CGATTTCGTC CGCGGCTTCG AGCGACTGAT CGGCGTGGCC CACGCCCACC TGCGCAATGC GCTGGAATAT ACGTTGCTGA TCCCGCGCCA TGAAACCGGC ATCCGCGAAT TCTGCCTCTG GGCTCTGGGG ATGGCGGTGC TCACGCTGCG CAAGATCCAT CGTCACCCCT ATTTCAGTGA TTCCGCCCAG GTGAAGATCA CACGGCAGGC AGTCAAGGCG ACGATCGTCA CCTCGCGGCT GACCCGCGGC AGCGACACCT TGCTGAAAGC CACGTTCCGG CTCGCCGGTC TCGGCCTGCC CGCCGCGGTG CCTGCCGCTG TGCTGCAGCC CCGGCCCATC GACATTTGA
|
Protein sequence | MSGTPPSQPA RHEHLSDDEF QAHFLDGVSR TFALTIPRLP EGLARPVSNG YLLCRIVDTI EDEVALTSTQ KRRYCEHFAR VVAGTAPAAP LADELFPLLS DQTLAAEREL IAAIPRVISI THGFAAPQQE ALAECVATMS RGMAEFQDKD LRHGLEDLRQ MGDYCYYVAG VVGEMLTRLF CHYSPEIAAH RSRLMELAVS FGQGLQMTNI LKDLWDDHAR GVCWLPQEVF TECGFSLTEL RPHHANPDFV RGFERLIGVA HAHLRNALEY TLLIPRHETG IREFCLWALG MAVLTLRKIH RHPYFSDSAQ VKITRQAVKA TIVTSRLTRG SDTLLKATFR LAGLGLPAAV PAAVLQPRPI DI
|
| |