Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03956 |
Symbol | |
ID | 6777878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 4263837 |
End bp | 4265882 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642757407 |
Product | general secretion pathway protein D |
Protein accession | YP_002128240 |
Protein GI | 196158751 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGGC GCACTAGCCA AAAACTATTA TCTCGCTTAG GCACAGCAAT GTGTACAGCG CTTCTGTGTT TCTCGGTGAC CGCTGCTGAG TACATGCCTA ATTTCAAAGA TACTGACATC AATGAATTCA TCAATATCGT TGGTAAAAAT CTTGAGCGCA CTATTATTGT GGACCCCAAC GTACGCGGCA AAATTAGCGT ACGCAGCTAC GATATGCTCA ATGAAGATCA GTACTATCAA TTTTTCCTAA ACGTACTTCA GGTTTACGAC TTTGCCGTTG TAGAAATGCC CAGCGGTATT TTAAAAGTGG TACGTTCTAA GGATGCAAAA ACATCAAACA TTCCGGTTGT CGAAGGCGCC AAGCAAGACG GTGATGAGTT CATTACTCGC GTGGTTCCAG TTTATAACGT GCCGGTACGT GAACTTGCCC CTATTTTGCG TCAATTAAAC GACCAGGCGG GCGGCGGAAA TGTGGTAAGT CACGACCCTT CTAACGTTAT GATGCTAACT GGCCGCGCTG CGGTGGTTAA TCGTCTTGTT GAAATCATTG AGCGCGTAGA CCGCGCTGGT GACGAAGAAG TAGAGATTGT TAAGCTTCGT TATGCTTCAG CTTCTGAGAT GGTACGTATT ATTGAAAGTA TCAACAAATC ACAAGGTAAA GCCAATACAG GCGCTAAATC TGAACCTCGC GTTGTAGCAG ACGACAGAAC GAACTCTGTG ATCGTAAGCG GCGACATTAA AGCGCGTCAG CGTCTTATCA ATCTTATTCA ACGCATGGAC CAAGAGCTGG AGTCCAATGG CAACACTCGC GTACTGTTTC TTAATTACGC TAAGGCAGAA GATTTAGTCA AAGTTCTGCA AGGCGTATCG GCCAGTATCC AAGCAGAAGA GCAAGGCAGC GGCGCCACAT CGCGCAGAGC AAGCTCAAAC CGCGAAATTA GCATCGACGC ACACGAAGAT TCTAACGCCA TCGTTATAAC TGCAGAGCCA GACATGATGC GCTCGCTAGA AGAAGTGGTG CGTCAACTGG ATATTCGCCG TGCACAGGTA CAAGTTGAAG CCATTATCGT TGAAGTTTTT GAAGGCGACG GCAACACATT AGGTGTGCAA TGGGTGTCAG AAGAGGGCGG TGGTACACAG TTCAATAATG GTGTTATAGG CGTCGGTTCA TTAGCTGTGG CACTACGACA GGCCGAAGAT AGAGAGACCA CGCAAACCAA CATCACTGCC AACGGTGAAG TGGTAGAAAC AACGGACACG ATAGAAGGCG ACTTCACTGC TCTTGCAAGC TTACTTGGCG GTGCAAACGG CCTGATTGCT GGCGTTATCG AAAATGGCTG GGGCGCAGTG GTACAAGCGG TAAGCACTGA TACCAATTCA AATATTCTTG CCACACCTCA CCTAACTACC ATGGATAACG AAGAAGCGTT TTTCATTGTT GGTCAAGAGG TACCTATTAT TACCGGTACG ACAACCGGCT CGAACAACTC TAACCCGTTC CAAACGGTGG ATCGTCAAGA AGTGGGTATT AAACTTAAAG TTACGCCGCA AATTAACGAA GGCGATGCCG TTCAGCTTCT TATTGAACAA GAAGTGTCTA GCGTTAGCGG TGCGACATCA GTAGACATCT CTATCAACAA GCGCGAAATC AAAACCACAG TGATTGTTGA CGATGGTGGT ACTATCGTAC TAGGCGGCTT GATTGACGAA GACGTACAAG AAAGTGTGTC TAAAGTGCCA CTTTTAGGCG ATATCCCTGT TCTTGGTCAT CTTTTCAAGA CGACGTCTAC AAGCAAACGT AAGCGCAACT TAATGGTGTT CTTAAAGCCA ACTATTGTAC GTGACGGTGC AACCATGAAC GCCATTAGCC ATCGTAAATA TAACTACATT CGCGCACTCC AGCTTAAACG TCAGCAAGAG GGTGTATCGT TAATGCCGTC AGCTGAAACG CCAAGCATGC CGCAGTGGGA CGATGCATTA GCCCTTCCAC CGTCGTTTGA AGAGTACCTG ACTGAGAAAG AGAAGCAAAA AGAAGGTAAC GAGTAG
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Protein sequence | MKRRTSQKLL SRLGTAMCTA LLCFSVTAAE YMPNFKDTDI NEFINIVGKN LERTIIVDPN VRGKISVRSY DMLNEDQYYQ FFLNVLQVYD FAVVEMPSGI LKVVRSKDAK TSNIPVVEGA KQDGDEFITR VVPVYNVPVR ELAPILRQLN DQAGGGNVVS HDPSNVMMLT GRAAVVNRLV EIIERVDRAG DEEVEIVKLR YASASEMVRI IESINKSQGK ANTGAKSEPR VVADDRTNSV IVSGDIKARQ RLINLIQRMD QELESNGNTR VLFLNYAKAE DLVKVLQGVS ASIQAEEQGS GATSRRASSN REISIDAHED SNAIVITAEP DMMRSLEEVV RQLDIRRAQV QVEAIIVEVF EGDGNTLGVQ WVSEEGGGTQ FNNGVIGVGS LAVALRQAED RETTQTNITA NGEVVETTDT IEGDFTALAS LLGGANGLIA GVIENGWGAV VQAVSTDTNS NILATPHLTT MDNEEAFFIV GQEVPIITGT TTGSNNSNPF QTVDRQEVGI KLKVTPQINE GDAVQLLIEQ EVSSVSGATS VDISINKREI KTTVIVDDGG TIVLGGLIDE DVQESVSKVP LLGDIPVLGH LFKTTSTSKR KRNLMVFLKP TIVRDGATMN AISHRKYNYI RALQLKRQQE GVSLMPSAET PSMPQWDDAL ALPPSFEEYL TEKEKQKEGN E
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