Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03738 |
Symbol | |
ID | 6778263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 4040942 |
End bp | 4041910 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642757191 |
Product | putative integrase |
Protein accession | YP_002128024 |
Protein GI | 196158535 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTCTC AGTTTATTAA ATCCCTGTAC GAGCACATGA TGCTCAAGCG CTATGCAAAG CGTACTATAC AAACCTACAT AAACTGGATT TCAGATTACA TTCGTTTTCA CAAATTTCAG CACCCGAAAG ATCTCGACGT GTTGCATGTT GAAGCATACC TTACTCATCT ATCTACCAAG CGAAAAAATG CGCGGTCTAC ACAAGCCACA GCACTTAATG CATTGGTCTT CCTGTACAAC AAGTATTTAG AACAGCCACT CCCTTCTGAC ATGAATTTTG TAGGAAGCGG AAGGGAAAGA AAGCTGCCAG TTGTGCTAAC CCAGTTAGAA GTAAAAGCAT TGCTTGGTAG GGTGCCTACC CATCATTACT TAGCAGTAGC ACTTCTTTAT GGCAGTGGCC TTCGATTAAT GGAGTGCGTG CGTCTTAGAA CGGGAGATAT AGACTTCGAC TACAAGTGTG TGAGGATTTG GTTTGGGAAA GGGGGCAAGC ATCGAGTGGT AACACTGTCA GAATCACTTA TCCCACTTTT AAAAAATCAT ATCAGTGAAA GTGAAAAACT TTTGCAACGA GATTTGATGG TGCCAGACTT TGCTGGTGCT TGGATTCCAC ATGGGTTGAG GAAAAAGTAT CAACAGCGCA ATAAAACGCT GGAATGGCAG TATTTGTTCC CTGCATCAAA GTTAAGTATC GATCCAGAAA GCAAGCTATT ACGGCGTCAT CATATAGATG AAAAACAGAT ACAACGCGCG GTAAGTCGTG CTTCAAGTGA TGCGGGAATA ATCAAGCATG TTACGCCTCA CACGCTTCGT CATTCATTTG CTACTCATTT ACTGCAATCT GGCGCAGACA TCAGAACGGT GCAAGACCAA CTAGGTCATG CCGATGTTAG AACCACTCAA ATTTATACCC ATATACTTCA ACAAGGAGCG AATGGTGTCG TCAGCCCACT TTCTAATTTA GCGTTTTAG
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Protein sequence | MKSQFIKSLY EHMMLKRYAK RTIQTYINWI SDYIRFHKFQ HPKDLDVLHV EAYLTHLSTK RKNARSTQAT ALNALVFLYN KYLEQPLPSD MNFVGSGRER KLPVVLTQLE VKALLGRVPT HHYLAVALLY GSGLRLMECV RLRTGDIDFD YKCVRIWFGK GGKHRVVTLS ESLIPLLKNH ISESEKLLQR DLMVPDFAGA WIPHGLRKKY QQRNKTLEWQ YLFPASKLSI DPESKLLRRH HIDEKQIQRA VSRASSDAGI IKHVTPHTLR HSFATHLLQS GADIRTVQDQ LGHADVRTTQ IYTHILQQGA NGVVSPLSNL AF
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