Gene MADE_03597 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_03597 
Symbol 
ID6779227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp3882924 
End bp3883970 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content45% 
IMG OID642757050 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_002127883 
Protein GI196158394 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.263029 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGATA TTAAAGTTTT AAATGGGAAT TGTGTTAGGC CTGCTATCGA CAGGCGCTTC 
TCTGTTGCCC CAATGCTGGA TTGGACAGAC AGGCATTGTC GCTATTTTTT ACGTTTAATG 
TCTAAGCATA CGCTTTTATA TACGGAAATG GTTACAACAG GGGCGATCAT TTACGGTAAA 
GGCGACTATT TAGGGTACAA CAAAGAAGAG CATCCTATCG CGGTACAGCT TGGTGGAAGC 
GATCCGTCTG ACATGGCCAA GTGCGCAGAA TTATCTCAAG AGCGCGGCTA CGATGAAGTG 
AACATTAATG TGGGCTGTCC AAGTGACCGA GTAAAAAACG GCAGCTTTGG CGCGTGTTTA 
ATGGCGCAGC CAGAAGTTGT AGCAAACTGC GTTAAAGCTA TGCAGTCTGC TGTTGATATT 
CCTGTAACCG TAAAATGTAG AATTGGTATT GATGACATGG ACGAAGATGA AGACTTTGCT 
CGGTTTATTG ATACGGTCGC CGACGCTGGC TGTGATACAT TCATTGTTCA CGCACGAAAA 
GCCTGGTTGC AAGGGCTAAG TCCGAAAGAA AATCGCGAAA TTCCGCCGTT AAATTATCCG 
CGCGTTCACC GCCTTAAACA AGCCCGCCCT GAATTATCGA TTAGTATTAA CGGTGGTATT 
AAAACACTTG CTGAAACCCA ACAGCAGTTG GAAAGCGTAG ATGGTGTTAT GGTGGGACGT 
GAGGTTTACG CAAACCCATA TATCATGTCG AGCGTTGATA AGGACATATT TGGTGATGCT 
AATGCACAGA GTCTGTCACG TCGTGAGATA GTACTTCAAA TGCAGCAATA TATTGAACGC 
CAAGAAGACC CTTACTTTAA ACCGTGGCAT GCAGCCCGTC ATATTTTGGG GCTGTATCAG 
GGCCAAGCGG GTGGGCGTAT ATGGCGCAGA TATCTTAGTC AAAATGGTAC AGGCAAAAAC 
CCAGATCCGA ATTTGCTCCT TAACGCACTG GATGCAGTAG AAAGTGCCCA ACGAGAAGTG 
GCCGAATATA ATAGTCAAAA AGACTAA
 
Protein sequence
MPDIKVLNGN CVRPAIDRRF SVAPMLDWTD RHCRYFLRLM SKHTLLYTEM VTTGAIIYGK 
GDYLGYNKEE HPIAVQLGGS DPSDMAKCAE LSQERGYDEV NINVGCPSDR VKNGSFGACL 
MAQPEVVANC VKAMQSAVDI PVTVKCRIGI DDMDEDEDFA RFIDTVADAG CDTFIVHARK 
AWLQGLSPKE NREIPPLNYP RVHRLKQARP ELSISINGGI KTLAETQQQL ESVDGVMVGR 
EVYANPYIMS SVDKDIFGDA NAQSLSRREI VLQMQQYIER QEDPYFKPWH AARHILGLYQ 
GQAGGRIWRR YLSQNGTGKN PDPNLLLNAL DAVESAQREV AEYNSQKD