| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03296 |
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| Symbol | |
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| ID | 6778574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 3558361 |
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| End bp | 3559473 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642756744 |
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| Product | twitching motility protein PilU (type IV pili) |
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| Protein accession | YP_002127582 |
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| Protein GI | 196158093 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGATT CACTACTTCA AAAAATGGTT GATACCAACG CGTCAGATTT ATTTGTCACT
GCGGGCTTTC CGGTTAGCGC TAAAATAAAC GGTAAACTTA CCCCTGTCAC TGATAGCGCA
ACGTCAGAAG AGGCATCACT CGCGCTGGTT CATGAAGCCA TGACCGATAA GCAGCGTGAC
GAGTTTCATA CGTCGAAGGA ATGCAACTTT GCTATCGTGC GTGATGGCAT TGGTCGTTTT
CGCTGTTCTG CATTTTGGCA GCGAGACCAA GCGGGTATGG TTATCCGTCG TATTGTGACG
CAAATACCGA AAGCCGATGA CTTGGGTCTG CCCCGAGTAT TAAAAGAAAT TATCATGTCT
AAGCGCGGTC TTGTTCTATT CGTAGGTGGG ACAGGTACGG GTAAATCAAC CTCGCTAGCT
GCACTTATTG GGCATAGGAA TGAAAACTCT CACGGGCATA TACTGACCAT TGAGGACCCT
ATTGAATTTG TACACGAGCA TAAAAACTGT GTGATTACAC AGCGTGAGGT GGGTATTGAT
ACCCAGTCAT TCGACGATGC GCTTAAGAGC TCGTTACGAC AAGCGCCAGA CGTTATTCTA
ATTGGTGAGA TTCGGTCTAT GGAAACCATG GAATATGCCA TGTCGTTCGC CGATACGGGC
CACCTGTGTG TGGCAACGCT GCATGCGAAC AACGCGAACC AAGCCATAGA GCGTATTATG
CACTTAGCGC CTAAAGATCA GCACGACAAG CTGCGCTTTG ATTTAAGCTT GAACATTCGT
GCTATTGTTG CCCAGCAACT GGTGCCGACG CCAGACGGTA AAGGGCGTGT GGCTGCCATC
GAGATACTGC TTAATTCACC ATTAGTGCGT GACCTTATTC AGCGCAATGA AATAGGCGCG
TTGAAAGAAG CCATGAAAAA GGGCAAAGAG CAGGGCATGC AAAGTTTTGA TATGGCGCTC
TACGACCTTT ACAAGGCCGG CCGAATTGAC ATGGATCAGG CGCTGCATCA TGCTGACTCT
CCGAATGATT TACGCTTAAT GATTAAGCTG GATACCAGCG ATGGCTCAAG CCTAGGTACG
CTGTCTAACG TGTCGATTGA TATGGACGAT TAA
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| Protein sequence | MLDSLLQKMV DTNASDLFVT AGFPVSAKIN GKLTPVTDSA TSEEASLALV HEAMTDKQRD
EFHTSKECNF AIVRDGIGRF RCSAFWQRDQ AGMVIRRIVT QIPKADDLGL PRVLKEIIMS
KRGLVLFVGG TGTGKSTSLA ALIGHRNENS HGHILTIEDP IEFVHEHKNC VITQREVGID
TQSFDDALKS SLRQAPDVIL IGEIRSMETM EYAMSFADTG HLCVATLHAN NANQAIERIM
HLAPKDQHDK LRFDLSLNIR AIVAQQLVPT PDGKGRVAAI EILLNSPLVR DLIQRNEIGA
LKEAMKKGKE QGMQSFDMAL YDLYKAGRID MDQALHHADS PNDLRLMIKL DTSDGSSLGT
LSNVSIDMDD
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