Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_03136 |
Symbol | |
ID | 6778069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 3388190 |
End bp | 3389737 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642756586 |
Product | exonuclease SbcD |
Protein accession | YP_002127424 |
Protein GI | 196157935 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAG CCGCATTGCG CCGAATGCGT TTCTCTATCT CCAATGCAAC AAGCCTGGTT CACTTCTACA TGAAAATATT GCATACATCT GACTGGCATT TAGGTCAGAG TTTTTTTACG AAAAGTCGCA AAAAAGAACA TGCCGCTTTC CTTAAATGGC TTCTCCAACA AGTAGAAGCG CATCAAATAG ATGCGATTAT TGTCGCGGGC GATGTGTTTG ACACTGGCAC GCCGCCAAGC TATGCCCGAG AGCTATACCA TGCGTTTATC GGTGAATTAC AAGGCATGCA GTGTACGCTA GTGGTGCTGG GGGGAAATCA CGACTCGGTG TCGGTACTAA ATGAAAGCAA GGCGCTACTG AAATATTTAA ATAGTCATGT GATAGCCAGT ACATATGGAG AAATAAGTGA ACAGGTGATT GCGCTTAAAA ACCGCAAGGG TCAGCCCAGT GCCGTGCTTT GTGCTGTGCC ATTTATTCGC CCTCGTGATG TATTGGTAAG TGAGTCAGGG CAAAGCGCAA CTGACAAGCG CCAAGCGCTG GGCAATGCAA TAAAACAGCA CTATGCGTCG CTTTATAGTG AAGCCCTAAC ACTACGCAAT ACATTGGGGA ATAATCGATT AGAAGAGGGC ATTGATCATA GCGCTGCTAT TCCCATTATC GCCACGGGGC ATTTAACCGC CTTGGGTGTA AGTCAGTCTG AAAGTGTGCG TGATATCTAC ATTGGCACCC TTGAAGGCTT TGACGCCAAA GGTTTTCCGC CAGCCGACTA TATCGCATTA GGCCACATCC ATAGACCCCA AAAGGTAGCG AAAGCCGAAC ACATTCGCTA TTCAGGCTCG CCTATACCGC TAAGCTTTGA TGAATTAACT TCTCAAAAAC AAATCGTGCT GGTGGAGTTT GATGGGGTAA GTACGACACC CAATATCTCA ACCCTTCCAG TACCTCGTTT TCAAGCCATG GAAGTAATAA AAGGGGACTT AAAAGCGATT GAGGCGATGA TTAATGAAAG CGAAGCCATA GCCTATGCTT CCCTAGCAAA CGAAGACCAA AACGCCAGTT CAGAACCTCT CGCTAGCCAT GAAGCTTCTA GTTCTAACGA AAAACCTTTT GGCTCAAAAG ACCCCGTGTG GTTGTGTATT GAGGTTGAAA CCGAAGACTA TCTGACTGAT TTACAGCAGC GAATTCAGGG CTTATTAGAA GGTAAAAACG CTGAAATTCT TCAGCTAAAA CGCATGCGTA AGCGCACGGT GAAAAGCCTG AGCGAAAAGC AAAATATTCA GCTTAGCGAG CTGTCAGTGA ACGAGGTTTT TGAAGCGCGC TTAGCGCTAG AGTCGTTGGA TGAGGAACCT AATGAAACGT CCAACGAGGC TTCAGAACTG CCGCAGAAAA ATACTGAGCC GTCACGTATT AAGCGTATTA AACATTTGTT TGCCGAAGCC GTAGCGCTAG TGCATACCAA TAAAGAAGAC TTAGAAAACA GCGAAGGGCT AGTACAATCA AAGCCTGCAA GCGAATCTGA ACCAAACAAA GAAACGCGGG GCGATTGA
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Protein sequence | MAKAALRRMR FSISNATSLV HFYMKILHTS DWHLGQSFFT KSRKKEHAAF LKWLLQQVEA HQIDAIIVAG DVFDTGTPPS YARELYHAFI GELQGMQCTL VVLGGNHDSV SVLNESKALL KYLNSHVIAS TYGEISEQVI ALKNRKGQPS AVLCAVPFIR PRDVLVSESG QSATDKRQAL GNAIKQHYAS LYSEALTLRN TLGNNRLEEG IDHSAAIPII ATGHLTALGV SQSESVRDIY IGTLEGFDAK GFPPADYIAL GHIHRPQKVA KAEHIRYSGS PIPLSFDELT SQKQIVLVEF DGVSTTPNIS TLPVPRFQAM EVIKGDLKAI EAMINESEAI AYASLANEDQ NASSEPLASH EASSSNEKPF GSKDPVWLCI EVETEDYLTD LQQRIQGLLE GKNAEILQLK RMRKRTVKSL SEKQNIQLSE LSVNEVFEAR LALESLDEEP NETSNEASEL PQKNTEPSRI KRIKHLFAEA VALVHTNKED LENSEGLVQS KPASESEPNK ETRGD
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