Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_02660 |
Symbol | |
ID | 6778253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 2886221 |
End bp | 2889391 |
Gene Length | 3171 bp |
Protein Length | 1056 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642756101 |
Product | putative multidrug resistance protein, AcrB/AcrD/AcrF family |
Protein accession | YP_002126950 |
Protein GI | 196157461 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.814389 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAACC AAAACAACAC GCAAAGCGGC ATCATTGCTT GGTTTGCTCG AAATTCTGTA GCGGCGAACC TTCTCATGTT CTTTATCATT ATCATGGGTA TAGCGAGCTA CTTCACTATT CAGCGCCAGA TGTTCCCCAA CATCGAAATA AACTATATCA CTATAGAAGC AACGTACCCG GGCGCCTCGC CACAAGAAAT TGAAGAAAGT ATTTTCATTA AAGTAGAGGA AGCGGTTAAA GATATTACTG AAATAAAGCG CACAGTCTCT CGTGCATTTA GAGGTGGCGG CGCTGTAACG TTAGAAATCG ACACCAAAGC CGAGCTTACT GACGTGCTAG ATAAGGTAAA GCTTCGCGTA GACAGCATTG CCACTTTCCC CGCTGGCATG GAGCCAGTAA ACGTATCGCA AGTTGAATTT CAACAGCAAG TTATTGAAAT GCCCCTAGTG GGCGACTTAC CGCTTTCCGA GTTAAAAGTT CTCGCAAAAG AAGTTGAAGA TGAACTTTTA CAGTTAGGCT CTATTTCCCT TGTTGAGGCT AATACGCCAG ATGATGAGAT TGCTGTTGAA GTTAAACCCG ATACGCTTAG AAAGTACGGG CTAACGATTG GTGATATTAC CCAAGCCATT AACAGCTACT CGGCGAATAT CTCGGCGGGT CAATTAAGAA CAAACTCGGG CATCGTCTCT GTTCGTGTAG AAAACCAATA CTACAGCGGT GATGAGTTTA AGCAAATTCC AATTAAAATT GGTGCTGGCG GTGCAAAGGT AACGTTAGGC GATGTAGCCT ACATCAATGA TGGTTTTGAA GAGGGTGAGC GCTACTTCAA ATACAATGGC ATGAACGCTA TTTACATCGC AGTGAAAGCC ACAAAAACGC AAAATACCAT TCCCGTAGCA GAGACGGTAA AAGCCTATAT TGATCAGAAA AACGAAACCT TGCCTCAGGG TATAAGTTTA CAGGTACTGG TCGATATGAC CTACTACCTA AATGCGCGCC TAGACATGAT GCTGTCAAAC CTCATTCAGG GGTCAATTTT GGTGGCACTT ATGCTAACTC TGTTTTTGCG ATTCAGATTG GCAGTATGGG TAATGGTCGG CCTCCCAGTC TGCTTCCTAG GTGCAATGAT GCTAATGCCC GTCTTCGGCG TCAGCATTAA CATTCTATCG CTCTTTGCGT TCATTATGGT GCTGGGTATT GTAGTAGACG ACGCTATCGT GATTGGCGAA AGTGCTTATA CTGAAATTGA AAGCAAAGGC GGTGGTGTGG ATAACGTTGT TCGCGGTGCT AAGCGCGTAG CGACTCCTGC TACATTTGGG GTATTAACCA CCATTGCTGT ATTCGCCCCA TTTACGTTAA GCAGCGGGCC AGAAGGTGCT TTTTTCTATA ACATCGCAGT GGTAGTTATC TTGTGCTTGG TATTTAGTTT AATTGAGTCG AAGCTTATTC TGCCCGCTCA CCTCGCTCAC ACTAAATTTT CTCCGGTAAA GCAAGACAGC TGGCGTGCTC GCTTTAATAA ACGCTTCTTT GCATTTGTAA ACGGCCCTTA TAAACGCACC GTGACCAAAG CCATTGAGTG GCGCTGGGCA GTGCTGATGA TGTTTGTAGC AATGTTTATG CTAAGCCTCG GGCTTATAGG CGCAAACTAT GTACGTATGG TGCCAAATCC CAAAGTGCCT CACGACTTCC CCAGCGTAAA AATAGAGATG AATGAAAACG TTTCAGACAT GACTACCATC AACGCGCTTA AAATAGTTGA GCAGACCATT TTAGACGTAG AAGAACAAAT TATTGATGAG TTTGGCCAAG GTATGATTCG AGACCGCCTT GCGTTTAATG AAGACAGAAC CGAAGGGCGT ATATTAACGC CGCTAGTTAA TGAAGAAGAC CGCCCTATTG ACACCTTCGA ACTAGCGCGT CGCTGGCGCG AAGCCATTCC TGAAATCACC GGCATGAAGT CTTTTACCGT GATTGACGAT GTGAACGGCG ATGGTGATGA TGGTGAGTTT GGCTATCTAC TTTTCGGCCC TGATATCGAC ACCCTTAACG CCGCAGGTCT TAAGTTTATT GAAATGCTTC AGCAGCAAGA AGGCCTGTTC GATGTAAGCT CTACTATCGA CCCGCCAAGC AAAGAAGTGC AGATGACATT ACTTCCGGTG GCTTACGACT TAGGCCTCAC GCTTTCGAAT ATCGCATCTC AAGTGGGTGC AGGCTTCTAC GGTGGCGAAG CACAGCGCGT CATCCGTAAT GGCGAAGAAG TGAAAGTAAT GGTGCGCTAC CCTGAACTTA CTCGTGAGCG TTTTGCAGAC TTAAAATACT CACTTATCAC TACGCCAAGC GGACAAGAAG TTATGCTAGG TGACGTGGTA GCCCTAGAAG AAAAACCCGG CATTAGCTAC ATTCGCCGCG AAGGTGGCTA CCGCAGCGTA TACATTTGGG GCAACATTGA TGAGGAAAAA GTTGAGCCGA ATGAAGTGGT GACTGAAATT CAGGATAAAC TTCTGCCTCA GCTTAAAGAG TTATTCCCAT CGGTAATGAC CGAGTTAGGT GGGGATATTG AAGAGCAGCA AGCCCAGCAA AACGAGCAAA TTCTGTTTTT CTTAGCCGCG ATGATCATGG TGTATATCCT ACTCGCCGTG CCGCTCAAAA GTTATGGGCA GCCGTTAATT ATTATGTCGG TGATCCCATT TAGCTTTACG GGAGCAGTGT TTGGCCACTT TGTACTAGGG CTAGACTTAT CTATGATGTC GAACTTTGGC CTTATTGCTG CTGCGGGTGT TGTGATAAAC GACTCGCTGG TAATGACTGA TTTTGTAAAT CAGCGCCGCG CTCAAGGGTA CAGCATTAAA GAAGCGGTTA CCGAAGCAGG TACTGCCCGC TTTAGAGCAA TCACTCTCAC CTCTATCACT ACGTTTGTAG GCGTATTGCC AATAATGTTC GAAACCAGCT TACAGGCAGC ATTCGTTGTA CCCATGGCCG CGGCATTGGG TTTTGCCGTT CTGTATGCCA CGTTGGTTAC GCTAATTTTG GTGCCTTGCT TATACCTGAT TCTGCTAGAT TTACATGTTC CATATACGTT TATTAAAAGC AAAATTGTGC GCAAGAGGAA GTCTGATGGC AGCGACAATA CTGTCTCCCC CCCTCCTCAG CCAAGTAGTT TAATTGACTA G
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Protein sequence | MNNQNNTQSG IIAWFARNSV AANLLMFFII IMGIASYFTI QRQMFPNIEI NYITIEATYP GASPQEIEES IFIKVEEAVK DITEIKRTVS RAFRGGGAVT LEIDTKAELT DVLDKVKLRV DSIATFPAGM EPVNVSQVEF QQQVIEMPLV GDLPLSELKV LAKEVEDELL QLGSISLVEA NTPDDEIAVE VKPDTLRKYG LTIGDITQAI NSYSANISAG QLRTNSGIVS VRVENQYYSG DEFKQIPIKI GAGGAKVTLG DVAYINDGFE EGERYFKYNG MNAIYIAVKA TKTQNTIPVA ETVKAYIDQK NETLPQGISL QVLVDMTYYL NARLDMMLSN LIQGSILVAL MLTLFLRFRL AVWVMVGLPV CFLGAMMLMP VFGVSINILS LFAFIMVLGI VVDDAIVIGE SAYTEIESKG GGVDNVVRGA KRVATPATFG VLTTIAVFAP FTLSSGPEGA FFYNIAVVVI LCLVFSLIES KLILPAHLAH TKFSPVKQDS WRARFNKRFF AFVNGPYKRT VTKAIEWRWA VLMMFVAMFM LSLGLIGANY VRMVPNPKVP HDFPSVKIEM NENVSDMTTI NALKIVEQTI LDVEEQIIDE FGQGMIRDRL AFNEDRTEGR ILTPLVNEED RPIDTFELAR RWREAIPEIT GMKSFTVIDD VNGDGDDGEF GYLLFGPDID TLNAAGLKFI EMLQQQEGLF DVSSTIDPPS KEVQMTLLPV AYDLGLTLSN IASQVGAGFY GGEAQRVIRN GEEVKVMVRY PELTRERFAD LKYSLITTPS GQEVMLGDVV ALEEKPGISY IRREGGYRSV YIWGNIDEEK VEPNEVVTEI QDKLLPQLKE LFPSVMTELG GDIEEQQAQQ NEQILFFLAA MIMVYILLAV PLKSYGQPLI IMSVIPFSFT GAVFGHFVLG LDLSMMSNFG LIAAAGVVIN DSLVMTDFVN QRRAQGYSIK EAVTEAGTAR FRAITLTSIT TFVGVLPIMF ETSLQAAFVV PMAAALGFAV LYATLVTLIL VPCLYLILLD LHVPYTFIKS KIVRKRKSDG SDNTVSPPPQ PSSLID
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