Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00870 |
Symbol | |
ID | 6775123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 916874 |
End bp | 917542 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 642754302 |
Product | CRISPR-associated protein, Cse3 family |
Protein accession | YP_002125178 |
Protein GI | 196155689 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTTAT CAAAAGTCAC AATGGTATCG AGCCCGCAAA CAGCCCAAGA ATTAGCAAAG CTTCAACGCA ACGGAGTTTA CGCATCACAC CAGTTAATAT GGCAGTTATT TTCAAATGTT ACAGAAAGAT CTTTTCTGTA TCGGGAAGAA ATGGGTATAA CGGGCATGCC GGAATTTTAT GTTTTATCCA AAACTGAACC GCAAGCAAGC CTACCTATCT TTTCGTGTGT AACCAAAGTA TTTGAGCCTA AATTAAAAAA AGGGCAACGG CTGTCATTCA AGCTGAGAGT TAATCCTACC GTTTGTGTAA AAGGTGAGGA TGGAAAGCAG CGCCGCCATG ATGTGATGAT GCAGGCGAAG TATAACGTTA AAGACGAATT ACCGGATGCA CAAACGCTCA AGATGCATAT GGAACAGGCT GCGATTAATT GGTTAAATAA CGAGAAAAGG TTGGATGAAT GGGGGATTAC TCTGGATTTC CAACCGTCCA TTGATGGCTA TACCCAGCAC AAGGTTCAGA AAAAACGTCA TCAGATACAG TTTTCAAGCG TTGATTATCA GGGCATGTTA ACAGTTCAAG ACCCACTAAA ATTCATTAAT CAATACGCCA AGGGATTTGG CAGAGCCAAA GGAATGGGCT GCGGATTAAT GATGATTAAA CGAGCGTAA
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Protein sequence | MFLSKVTMVS SPQTAQELAK LQRNGVYASH QLIWQLFSNV TERSFLYREE MGITGMPEFY VLSKTEPQAS LPIFSCVTKV FEPKLKKGQR LSFKLRVNPT VCVKGEDGKQ RRHDVMMQAK YNVKDELPDA QTLKMHMEQA AINWLNNEKR LDEWGITLDF QPSIDGYTQH KVQKKRHQIQ FSSVDYQGML TVQDPLKFIN QYAKGFGRAK GMGCGLMMIK RA
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