Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00117 |
Symbol | |
ID | 6777015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 116738 |
End bp | 118852 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 642753547 |
Product | DNA repair ATPase |
Protein accession | YP_002124431 |
Protein GI | 196154942 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR03185] DNA sulfur modification protein DndD |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.621069 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATAA AAAGTTTATC GCTTAAAAAT TTTCAATGCT ATTGTGGCGA GCTAGATCAG AATCACTTTT GCTTCAAAAA CGGCCTAAAC CTAATTATTG GTAATAATGG AAATGGCAAA TCTAAAGTTT TTGATGGTTT TTATTGGGTC TTATATGACC AAATCTTTGA CACTGACATA CGACAGTTTA CCCCTACGAG TGTATATGGT GAAAAGTTAA TATCAGATAA AGTTACTAGA AACTGTGAGG TAGGTGACAC AGCTACTGCC GAAGCATGTC TCGTAGTAGA GAGTAGTCAA GGCAGAGAGT ACAGGCTTAC TCGAGTATTT CATTGCACAA AGCTCTCAGA TACTGAATGG ATGAAAGAGC GGTCTATCCT TTTGATCGAA GAGAAAAAAA CAAATAGATG GACTACATCA AATGAGACAC CTGATTCAGT ATTAAATAGG GTCATTCCCC CACACATCAA ACCTTATATG TGGTTTCAGG GTGAACAAGT TGACGGCCTA ATGGATTTAA CGCAAAAAAG TTCATTAGCC AAAATAATAA AGCTGCTATC CGACATAAAC TTTTACGATG AACTCGTTGA AATCACGCAT AAAGGTGCTG AGAAATCATC TAAAAGCTTA TTAAAAAACC AAAAAAGCTT AAGTAAAAAC AAAGAAGAAT CTGATAGACT TGAAAAAGAA TTTAACGATA ACTTAAGAGA AATAAAAAAT CTCGAAGATG ACAAAAAATT AGCGAATGAG AATTACACCA ATGCGCAATC AAAGATAAAC GATCTTTTAA ATAAAATTGA TGATGCGGAA GAAAAACAAA AATTAAAAAT TGAAAGAGCT AACCTTGAAA TAAAATTAAA AGCCAATGAA GACTCTGTAA TTGAAAAAAG GAAGAGCTTC ACCAGCAAAA TGTTCCATGA CTACTGGATT CTTAAGTTTA GCAAACCATC ACTAGAAAAA TTTGGTCGCA AATATAAAGA ATATTTTGAA AAACACCAGC AGATTGTTAA TCAAAATCAA CAAACTTCAT TTAAGCTTCC CCTTAATGTA CCGCAGCCCA TGCACCTGCA CGGGATGCTA GAAAGTGAGA CTTGTTACGT TTGTAATAGG AAGGCAGAAA AGGGAAGCGA TGCCTACCAA CACATAGAAG AGTTAGTTAA CCGCAGTAGT AGTGTAACAA AGTCGCCGTT TGAGTGTGAC TGCTCCGAAT ATTATGACCA TCTATACACT AAAAGCATTC GATTTTATCA ACATATTGAG ACTACGAATG AACGAATTTC AGAGCAATTC GACACAATTT CGAGTCTTGA GGCTGATATT CTTGAAAATA AAAGTAGATT GGACACTATA AATGCAGAGC TTGAAGGTTT ATTAGAAAAC GATAGCTCTG AAGATGTTGT AAGTGAATTT AGACGTGCTC AAAGCAATGT GGAAAGATTC GGAGCAGAGC AAAAAGATAT TGAAAATAAA CTCAATCGCC TCAGCACGAA TCAGGAAAAA ATCAAAAAAT CATTAGAAAA ACTGACATTA GGTAAAGTTG ATTTAGCTTT AGTGAATGCT GAAAAAGTTT TTGCTTCGCT AGCTAGAATC GCAAAATCTA CTAGAGAAGA GGTTTATACA CAGATCGTCT TAGAGCTAGA GAGTAAAGCA AACAAAATCT TTGAGGAAAT GACGTCCTCC AACATGTCCT TTAAAGGTAG AATTAGGTTA AAGCGCCTTG ATAACGGTGC ATATAAAGCT GAAATAGTTG ACCAAGAAGG TTACTCTGTT ACAGGAAGCA ATGATTCTAA TATTGTTTTG GTGAAACTCG CGCTAATCAT GGCTATCTTG ACGGCTAGAG CCAGGTGGAG TGACAACTTC ACTTTAATTT CTGATGCGCC CACGTCAAAG ATGGCACACG AATACTCCAC AGGCTTCTAT AAGGCTTTAA GCTCGAATTT TTCTCAGTCT ATCGTTATGA CTTATGATTT TATCGAACCA GAAGATAGGG CTAAGTTCAT AATGGAAAAC AAACAAAACA TTGGTTCAAT TCACATACTC AATTCCAAAT ACGCTAGTGG AAATATGAAT GACAGAACGG ACTTAGAAAC CTCTATAGAG GAAGTTGTTT TATGA
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Protein sequence | MLIKSLSLKN FQCYCGELDQ NHFCFKNGLN LIIGNNGNGK SKVFDGFYWV LYDQIFDTDI RQFTPTSVYG EKLISDKVTR NCEVGDTATA EACLVVESSQ GREYRLTRVF HCTKLSDTEW MKERSILLIE EKKTNRWTTS NETPDSVLNR VIPPHIKPYM WFQGEQVDGL MDLTQKSSLA KIIKLLSDIN FYDELVEITH KGAEKSSKSL LKNQKSLSKN KEESDRLEKE FNDNLREIKN LEDDKKLANE NYTNAQSKIN DLLNKIDDAE EKQKLKIERA NLEIKLKANE DSVIEKRKSF TSKMFHDYWI LKFSKPSLEK FGRKYKEYFE KHQQIVNQNQ QTSFKLPLNV PQPMHLHGML ESETCYVCNR KAEKGSDAYQ HIEELVNRSS SVTKSPFECD CSEYYDHLYT KSIRFYQHIE TTNERISEQF DTISSLEADI LENKSRLDTI NAELEGLLEN DSSEDVVSEF RRAQSNVERF GAEQKDIENK LNRLSTNQEK IKKSLEKLTL GKVDLALVNA EKVFASLARI AKSTREEVYT QIVLELESKA NKIFEEMTSS NMSFKGRIRL KRLDNGAYKA EIVDQEGYSV TGSNDSNIVL VKLALIMAIL TARARWSDNF TLISDAPTSK MAHEYSTGFY KALSSNFSQS IVMTYDFIEP EDRAKFIMEN KQNIGSIHIL NSKYASGNMN DRTDLETSIE EVVL
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