Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lreu_0897 |
Symbol | |
ID | 5189377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus reuteri DSM 20016 |
Kingdom | Bacteria |
Replicon accession | NC_009513 |
Strand | + |
Start bp | 952334 |
End bp | 953224 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640590729 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001271497 |
Protein GI | 148544127 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000000354473 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATTA AACGCTTTGT TTATCAACGA AAGAGACTTG GCTATTCACA AGTTGCCTTA AGCAAGGGGA TTTGTACCCA GTCGACCTTA AGTAAGTTTG AAAGCAATGG TCAAGTACCA TCACTCACGA TTCTGGCGCA GCTTTGTGAT CGGCTAGGGC TAACGATTGA TGATTTAAGT AAGGACAATA CATCCTCAAT TCGTTATATG AGAAGCCTGC TTGACCAGAT TGAATTGGCT TTAATGATTG AACACTTTCC TCAGGCAGTT AGTAACCTTA AGAAGATTCG GCTTGAAGAT TTAAAATCTC CACAAGATCG GATGCAATAT TATTATTTAA AAGGGATGAT TTATACTTTA ACTAATAATA ACGCGTCGAC AAGTCTCTTT AACTTTACTA AGATTTTAGA TGAACTGGAT GAGCAACATC GGACGATCTT TTCACCATTA GCATATTTAG GATCAGGGAT CTTATATGCG CGGCAAAATT CAATGGAACA TGCTGATTTC TTTTTCTCAA AGGTTATTTC ATTTTTAAGA TCAAAGGCTG ATGAAGACTT AGCAGGTGTT GATCGGAATT ATTATCTACG GATTGTAACA ATGATGTACT ACGCTGCCGA GTACCATTCA TTAAATAAGC GGTTAGAGGT TAGTAACCAA GTTTTGGAGG CTACGACAAA GATCTGTGCT AGCAATCACG TTACTTATTT CTTACCACGT ATCAAATTAC TAGAAGCAAA TAATGCAATT GAGTTAGGAG AAAGCTCGAA AAAAATACGC CGGCTTTTAA CTGAAGCAGA GGTATTTGCT CGCTTCAATA AAAACAATGT TGTTGAAGTT CAAGTAGCTG CCCTGTTAAA TAACTTTGAT AAGACGATTA GTAATAAATG A
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Protein sequence | MDIKRFVYQR KRLGYSQVAL SKGICTQSTL SKFESNGQVP SLTILAQLCD RLGLTIDDLS KDNTSSIRYM RSLLDQIELA LMIEHFPQAV SNLKKIRLED LKSPQDRMQY YYLKGMIYTL TNNNASTSLF NFTKILDELD EQHRTIFSPL AYLGSGILYA RQNSMEHADF FFSKVISFLR SKADEDLAGV DRNYYLRIVT MMYYAAEYHS LNKRLEVSNQ VLEATTKICA SNHVTYFLPR IKLLEANNAI ELGESSKKIR RLLTEAEVFA RFNKNNVVEV QVAALLNNFD KTISNK
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