| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0696 |
|---|
| Symbol | |
|---|
| ID | 5188645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 763929 |
|---|
| End bp | 765116 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640590530 |
|---|
| Product | NusA antitermination factor |
|---|
| Protein accession | YP_001271298 |
|---|
| Protein GI | 148543928 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000696258 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTAAGC CAAAAATTAA CACTGAGATG ATTGGCGCCC TTGATTATCT TGAAAAAGAA
AAGGGTATCA AGAAAGAGAT TGTTATTGAA GCGTTAGAAC AAGCACTTGA ATCAGCATAC
AAGCAAAATT ACGGTGATAA GAATGTTGAA GTAGAATTCA ATTCATTGAC TGGGAATATT
AAAGTCTACG CTGTAAAAAC AATTACTGAT GATGAAGAAG CAGTCGAAGC AGATAGCAAC
GAATTTATGA GTTTAGCTGA TGCACGGAAG CTTCCTCATG GCCAAGGGTA TGATATTGGT
GATGAAATTC GCGAAGAAGT TACTCCTCGT GACTTTGGTC GGATTGCTGC CCAAACTGCT
AAACAAGTGG TAATGCAACG TCTCCGTGAA GAAGAACGGA AAATTATTTA CGACAGGTAC
AAGACTTATG AAAACGAGAT TATCACTGGT GAAGTTTCAC GAGAAGATAA GCGTTTCACA
TACGTTGATT TAGGAGATGG CGTAGAAGGT GCTATGGGCT TTAGAGATAA GATGCCTAAT
GAGCACTACC ATGTCCATGA TCGGATTCAA GTATACGTAA CGAAAGTAAA TGACGATCGT
CGGGGACCAC AAATCTTTGT TAGCCGGACT GCTCCAGAAC TTTTGAAGCG ATTATTTGAA
CGAGAAGTGC CTGAAATCAA GGATGGGACT GTCTTAATCG AAAATATTGC TCGTGAAGCA
GGTGATCGTG CTAAGGTTGC GGTATACTCA AATGATCCTA ATGTTGATCC AGTTGGGACT
TGCGTTGGTC CACGAGGTTC TCGTGTCCAA GCAATCGTTA ATGAACTTGA TGGCGAGAAT
ATGGATATTG TGGAATACGT TAAGGATCCC GCTAAGTTTA TCGCTAATGC GTTGAACCCA
GCAGAAGTAC TTGATGTAAT CTTTAACGAA GAGAAGGCAG CAAGCGAAAC TGAGGATAGC
GAAGGAGAAG AAACGACTGA AGGACAAACA GAACGTTCTT GCACTGTCGT TGTTCCAGAT
AGCCAATTAT CCTTAGCCAT TGGTAAGCGG GGACAAAATG CTCGTCTCGC TGCTCGTTTG
ACTAAGTACA AGATTGATAT CAAGTCTGAA TCTGAAATGG CTGAAAATGA TCAAGAATCT
GAAGAAGTAG CTGATTCAGA AGAAAATATT GACAATAACG AAGAATAA
|
|---|
| Protein sequence | MSKPKINTEM IGALDYLEKE KGIKKEIVIE ALEQALESAY KQNYGDKNVE VEFNSLTGNI
KVYAVKTITD DEEAVEADSN EFMSLADARK LPHGQGYDIG DEIREEVTPR DFGRIAAQTA
KQVVMQRLRE EERKIIYDRY KTYENEIITG EVSREDKRFT YVDLGDGVEG AMGFRDKMPN
EHYHVHDRIQ VYVTKVNDDR RGPQIFVSRT APELLKRLFE REVPEIKDGT VLIENIAREA
GDRAKVAVYS NDPNVDPVGT CVGPRGSRVQ AIVNELDGEN MDIVEYVKDP AKFIANALNP
AEVLDVIFNE EKAASETEDS EGEETTEGQT ERSCTVVVPD SQLSLAIGKR GQNARLAARL
TKYKIDIKSE SEMAENDQES EEVADSEENI DNNEE
|
|---|
| |