| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2323 |
|---|
| Symbol | |
|---|
| ID | 6878317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2300436 |
|---|
| End bp | 2301377 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642790182 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_002220731 |
|---|
| Protein GI | 198284410 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCCC TGGGTCTGAT CGTTTCCGCC CTGTTGCTTC TCGGCATCGC GGCGGGCGTC
TGGCTCTCCT TCCGGCAGCG GGAGGCGTTT CCGGATGCCC TGCGCGAGCG CCTGCGGGCC
TTCGACGCGC ACACGGGCAA AGCGGGGGAT ACGGAATCCG CCCAGGACGA TCTGCTGGAC
CATGCCGCCC GGTACAAAAA GGAATCCTTC CTGCTCCAGG CGGAGGAATG GCTGCGGCGG
GCGGGGTTGC GGCCCAAATC CTATCTCCCC AAGGCCGCCA TCGTCGGCCT GCTGATCACT
CTGTTGCTGG CGCTTCTGGT CAGCGACTGG CTGGCGCTGG CGTTCATCCT CATCTTTTAT
CCATTGGCTC TGTGGGGGCA TATCCGCTAC CGGATCGGTT TGCGGCGCAG CGCCGCGATT
CTCGCCCTGC CGGGTTTTCT GGATGCGGTG GTGCGCGCCT CGCGGGTGGG CGCCAGTCTG
CCCGCCGCGC TCCTGAGCGC CACCAAGGAT GCCCATGGAC CGGTGCGGGA GGTGTTCAAC
CAGATCATGC GCCGCCAGCA ATCCGGAACC CCCATCGACC AGGCCATGCT GACGGTGGGC
AAACGCTACC AGATGCAGGA ACTGGCGATC ATCGCCACCG TGCTGCGCCT GAACATGCGC
TACGGCGGGC GTACCGACGT CGTGCTCGAA CGCATCGCCG ACTGGTTGCG GGGGAGGGTG
ATGGCCCAGG CGGAGTTCAA CGCCCTGTCC GCCGAAACCC GGTTGGGGGC GCTCATTCTC
AGTCTGATGA TTCCCGGGCT CGCCCTCTAC ATCGTGCTGA TGAACCACAG CTACCTGCAG
GGCATGTGGG CGGTATCGAC CGGGCGCATG CTCCTGGTCG CCGGTGGAAC CCTGCTGGTG
ACCGGAGTGG TTCTGCTCAA TCGTATGGCC AAGTTGAGGT GA
|
|---|
| Protein sequence | MMALGLIVSA LLLLGIAAGV WLSFRQREAF PDALRERLRA FDAHTGKAGD TESAQDDLLD
HAARYKKESF LLQAEEWLRR AGLRPKSYLP KAAIVGLLIT LLLALLVSDW LALAFILIFY
PLALWGHIRY RIGLRRSAAI LALPGFLDAV VRASRVGASL PAALLSATKD AHGPVREVFN
QIMRRQQSGT PIDQAMLTVG KRYQMQELAI IATVLRLNMR YGGRTDVVLE RIADWLRGRV
MAQAEFNALS AETRLGALIL SLMIPGLALY IVLMNHSYLQ GMWAVSTGRM LLVAGGTLLV
TGVVLLNRMA KLR
|
|---|
| |