Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2000 |
Symbol | |
ID | 6877990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1999529 |
End bp | 2000611 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642789871 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_002220424 |
Protein GI | 198284103 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.461729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCT GGAAGCAAAC CGCGCGGATC GCGGCCCTGA TATTCGCTGT GGCAAGCCTC GCCGCCTGCA GTAAATCGCC TCCCGAGGCG CCCCTGGCGC AGGGTAAAGT CTCTGCGCCC GTCCTGCAGA TACGGAATCA AGGTATGGCT GCCTACGCCC GTGTGCCGGG TACGGTCGTT GCCCATCAGC AGGTGCAGCT CAGTTCGCGT CTGAGTGGTT ACATCCACTC CATGAGTGTG CGTGATGGAC AGTCGGTACG GGCGGGACAA CTGCTTTTTG AGGTAGATCC GACGGATGTC GTGGGGCAGG TGCAGCAGGC GCAGGCGGGA CTGGCTGAGG CTCAGGCGGC GCTCACCGAC GCCCGCTCCA ATTATGAGCG GTTCAAGGTC CTGTACGCTC AGAAGGCTAT TCCCAAGCAA CAGTGGGACC AGGTAAAGTC GGCCTATGGT ATGGCGCAGG CCCGTGTTGC AGCCGCCCGC GGTGGGGTCG GCACGGCACA GTCACAACTG CGCTATGCCC GGGTAACGGC GCCCTTCTCC GGGATCATCA CACGCAAGTT CCTGCAGAAC GGAGACCTCG CGTCACCCGG TCAGCCCATT CTGGCCCTAG CGGACACTTC CCGACTGGAA GTCCAGTGCA GTGTCAGCGG GACGCTGTAT CACAGCCTCC AGATCGGTCA GAAAATCGCG GTCCTCGTCG ATGGAAAACG TGTTCCCGCA ACGGTTCTGG ATTTGGTCGG GGCTGCGGAC GCGATGACCC ATGCCCATAC GGTCAAACTC AGCCTGCCCG CCGACAGTAC GCTACAGGCT GGTGACTATG TCAGCGTGGA AGTGCCGGTC ACCCAGCGGC AGGTGATGAC GGTGCCAGCG GCTGCCTTGC TGGATCGGGC TGGAATCCCC GGTGTTTTTG TCGTTGACGC GCAAGGTGTC GCGCATTATC GCATGGTGCG ACCGGGTCCG AGCACGCCGG AGGGTGTGGA AATTCTTTCG GGGCTGAGTG CGGGAGAGAC GGTGGTCGTG GGCAATCTTG CCGCCGTGAA TAACGGAGAT CACATCGAGC CAGAGGGAGC TACCCATGGC TGA
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Protein sequence | MNTWKQTARI AALIFAVASL AACSKSPPEA PLAQGKVSAP VLQIRNQGMA AYARVPGTVV AHQQVQLSSR LSGYIHSMSV RDGQSVRAGQ LLFEVDPTDV VGQVQQAQAG LAEAQAALTD ARSNYERFKV LYAQKAIPKQ QWDQVKSAYG MAQARVAAAR GGVGTAQSQL RYARVTAPFS GIITRKFLQN GDLASPGQPI LALADTSRLE VQCSVSGTLY HSLQIGQKIA VLVDGKRVPA TVLDLVGAAD AMTHAHTVKL SLPADSTLQA GDYVSVEVPV TQRQVMTVPA AALLDRAGIP GVFVVDAQGV AHYRMVRPGP STPEGVEILS GLSAGETVVV GNLAAVNNGD HIEPEGATHG
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