Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1993 |
Symbol | |
ID | 6877983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1992710 |
End bp | 1993387 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642789864 |
Product | channel protein, hemolysin III family |
Protein accession | YP_002220417 |
Protein GI | 198284096 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0837698 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAGA ATGGCGGACA GGTGATGGAT CTGAATTCGG ACGGCATGGT GCGGGATCAG ACCCGTGTTG AAGAGTGGAT TAACAGTCTG CTGCATGGCG CAGGCGCGGT CGGTGCCGCG CTGGTTTTTG TGCTGTGGAT CGTTGGCGCA GGTCTCCACA GTACCCCTCT CGCGGTAATC ACCATCAGTA TATTCGTGGT GACCATCGTG ATGCTGTACG GCGCTTCGAC CATTTATCAC ATTCTGCCGT CGGGGCGACT TAAACGGGCT TTCCAGTTGG TGGACCGATC CGCGATCTAT CTCCTTATTG CCGGCACTTA CACCCCGGTG ACGCTGATGG TGCTCCATGG CTCGTGGGGT TGGGTGCTGC TGACCGTGGA GTGGGGCCTT GCGGCGCTGG GCATCACTCT GCTGGCCATG GCAGGGACGC GCGCGCAATC GATTTCTCTC TGGCTCTACC TCCTCATGGG CTGGCTGGCG GTATTCGCCG CCGTGCCGCT CTATAATTCC GCACCCGGCT GGTTTTTGTG GTGGCTGGCC GCTGGCGGGC TGGCCTATAC CATAGGCGTC CTCTTTTTTC TGCTGGATCG CTGGAAATAT TTCCATTCCA TCTGGCATGT TTTTGTCATC GCGGGTACGG CGCTGCAGTT CTGGGCTATT CTTCAATATG CTGGCTGA
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Protein sequence | MMQNGGQVMD LNSDGMVRDQ TRVEEWINSL LHGAGAVGAA LVFVLWIVGA GLHSTPLAVI TISIFVVTIV MLYGASTIYH ILPSGRLKRA FQLVDRSAIY LLIAGTYTPV TLMVLHGSWG WVLLTVEWGL AALGITLLAM AGTRAQSISL WLYLLMGWLA VFAAVPLYNS APGWFLWWLA AGGLAYTIGV LFFLLDRWKY FHSIWHVFVI AGTALQFWAI LQYAG
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