Gene Lcho_4318 details

Gene Information

• Locus tag: Lcho_4318
• ID: 6163101
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4830228
• End bp: 4832075
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641667095
• Product: binding-protein-dependent transport systems inner membrane component
• Protein accession: YP_001793334
• Protein GI: 171060985
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG1178] ABC-type Fe3+ transport system, permease component

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.242541
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGCGGCG CAGCCGCGTC CTGGGTCTGG CTGGCGGCGA TCCTGCTGCT GGCCTTCGGG 
CTGGCGCGCT GGTTGGCGCG GCGCGGGCGT TTCGGCGGCG ACGTGACGGT GGCGACGATC 
GTGGTCGTCA TCGCCACGCT GCTGCTGCTG TTCATCTTCT ATCCCGTCGG GCGCTCGCTG 
TTTGCGGCCT TGCTCGACGA TCAGGGCGGC TTCGCGCCGA GCCTGGCGGC GCAGCGCCTG 
TTCGCGCCTG ACATCTGGAG CCTCGATTGC CTGGCCGGCG GTTCGCGCTG CGGGGTGGCG 
GTCAACTCGC TGCTGCTGGC GAGCATCGTC GGCCTGTTGT CGACCTTGCT CGGCCTGGCG 
CTGGCGCTGG CCGCGCAGCG TGGCCGTGCC GGTGGCACGC AGGGCCAGGG CCGGGTGTTC 
AAGCTGATGG CGGTGCTGCC GATCGTCACG CCGCCGTTCG TGATCGCGCT CGCCCTTGTC 
GTGCTGTTCG GCCGCACCGG CCTCGTCACC GGCTGGTTGA GCAGCGCCTT CGGCCTGCCA 
CGTTCGCGCT GGATCTACGG CCTGCCGGGC GTCACGCTGG CGCAGCTGCT GTCGTTCACG 
CCGATCGCGT TCATGATCCT GAGCGGCGCG CTGGCTGCCG TCAGCCCGTC GCTCGAAGAG 
GCGGCGCAGA CGCTGCGCGC CTCCAGGGCA CGGGTCTTCC GCAGCGTCAC CTGGCCGCTG 
CTGCGCCCGG CGTTGGCCAA CGCCTTCCTG CTCGGTTTCG TCGAGAGCCT GGCCGACTTC 
GCCAACCCGA TCGTGCTGGC CGGCAACTTC GAGGTGCTGT CGATCAAGAT CTTCTTCGCC 
GTGGCCGGTG CACAGCACGA CCCTGGCCGC GCCGCGGGGC TGGCCGCCGT GCTGCTGGCC 
TTCACGCTGG CGGCGTTCTG GCTGCAGCAG CGCTGGCTCG GGCGGGCCTC GTACGTCACC 
GTCAGCGGCA AGGGTGATGG CGGCTTGCCC GCTGCGTTGC CCACCGGCCT GCGCATCGGC 
TGCGTCTCGC TGTCGTGGTT GTGGATCGCC TTCACGCTGG CCTGCTACGC GGTGATCGCG 
GTGGGCGGCT TCGTCAAGGA CGTCGGCCGC GGCGACATGA CGCTGTCGCT GGCCCACATC 
GGCGCCGGCT TCGGCATCGA GTGGGGCGAG CGCGGGCTGG CGTTCACTGG CTCGGCCTGG 
GACAGCTTCT TCACCACCAT CGAGGTGGCC GCGATCGCCG CGCCGATCAC CGCGGTGATC 
GGGCTGCTGT CGGCCTACGT CATCACGCGG CATCGGTTCG CCGGCCGGGC GTCGTTCGAG 
TTCCTGACGC TGGTGAGCTT CGCGGTGCCG GGCACGGTGA TCGGCGTGTC CTACATCGTC 
GCCTTCAACG TGCCGCCGCT GGAGCTGACC GGCGGCATCG CGATCCTGGT GCTGTGTTTC 
GTGTTCCGCA ACATGCCGGT GGGCGTGCGC ACCGGCATCG CGGCGCTGGC GCAGATCGAC 
AGGAGCCTCG ACGAGGCGTC ATCGACGCTG CGCGCCGACA CCCTGCAAAC GCTGCGCCGC 
GTGGTGCTAC CGCTGCTCAG GCCCGCCATC CTGACCACGC TGGTCTTCAG CTTCACGCAC 
GCGATGACGG CGGTCAGCGC GGTGATCTTC CTGGCCACGG CCAAGTACAA CCTCGCCACG 
GTCTACATCA TCGGTCGCGT CGAGGCGGGT GAATACCCGC TGGCGATCGC CTATTCGATG 
GTGCTGATCG CCTTCATGCT GACGGTGCTG CTGCTCCTGC AGCGCGCCAC CGGCGAGGCC 
CGCCTGGGCC GCCGCAAGAC GGGTGGCGTG ATCGTCACGG GACATTGA 

 

Protein sequence

MSGAAASWVW LAAILLLAFG LARWLARRGR FGGDVTVATI VVVIATLLLL FIFYPVGRSL 
FAALLDDQGG FAPSLAAQRL FAPDIWSLDC LAGGSRCGVA VNSLLLASIV GLLSTLLGLA 
LALAAQRGRA GGTQGQGRVF KLMAVLPIVT PPFVIALALV VLFGRTGLVT GWLSSAFGLP 
RSRWIYGLPG VTLAQLLSFT PIAFMILSGA LAAVSPSLEE AAQTLRASRA RVFRSVTWPL 
LRPALANAFL LGFVESLADF ANPIVLAGNF EVLSIKIFFA VAGAQHDPGR AAGLAAVLLA 
FTLAAFWLQQ RWLGRASYVT VSGKGDGGLP AALPTGLRIG CVSLSWLWIA FTLACYAVIA 
VGGFVKDVGR GDMTLSLAHI GAGFGIEWGE RGLAFTGSAW DSFFTTIEVA AIAAPITAVI 
GLLSAYVITR HRFAGRASFE FLTLVSFAVP GTVIGVSYIV AFNVPPLELT GGIAILVLCF 
VFRNMPVGVR TGIAALAQID RSLDEASSTL RADTLQTLRR VVLPLLRPAI LTTLVFSFTH 
AMTAVSAVIF LATAKYNLAT VYIIGRVEAG EYPLAIAYSM VLIAFMLTVL LLLQRATGEA 
RLGRRKTGGV IVTGH