| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4288 |
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| Symbol | |
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| ID | 6161229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4798140 |
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| End bp | 4801316 |
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| Gene Length | 3177 bp |
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| Protein Length | 1058 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641667065 |
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| Product | type III restriction protein res subunit |
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| Protein accession | YP_001793304 |
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| Protein GI | 171060955 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAC CCGATGGTCT CTATGACCTG TTGCTGACCG AGGGCCTGTC CCGATCGCTC
GCAACCATCG ACCCCAGCAG CGCGGATGTG TCGGCGCTCA AAGGTGGCGC CGCAGAGTTC
TTGGCCGACG TCATCACGCG GCAGTTGGCG ACGCTGCTTG ACGATGTCGC CGGTGACGGC
GCCGACAAAG CCACGCGGCA ACTCGAACTG GTCAATGAGC TCTTGGTGAT GCTGCGCCAG
CGGCTCAACG TCGGCGACGG TTCGACCGGT GCCGCTGGGT CTGCCGAAGT CGTCGACCTG
GTGGCATCGC CGCTGCGCGT CCTCAGGGCC GTGCAGCGCA ACCAGCAGTT CCCGACGTCA
CCGGAGATCG GTCTGGCCGT GCCGTGGCTT TTCACGGCCG GCAAAGGCTC GCCTTCATTG
CTGCAGGAGA TCCGCCGCGA ACTGGCCTCC AGCGACCAGG TGGATATCCT CGTCAGCTTC
ATCACCGTGT CGGGCGTTCG CAAGCTGCAG GACGTGCTGC AGCAGATCAC GGCCAAGGGC
GGAAACGGAC AGGGCCAAGC GGGCACACGC CTGCGCATCC TCACCACCAC CTACACCGGC
GCGACCGAGG CACGGGCGCT GGATGAGCTC GCGCGCCTGC CGGGGTGCGA GGTGCGTGTG
TCGCTCGATG GCCGGCGCAC GCGCTTGCAC GCGAAGGCCT GGCTGTTCCA GCGCAAGACC
GGCTTCGGCT CAGCCTATGT CGGCAGTGCC AACCTGTCGG GTGCGGCGCT GACCGGTGGG
CTGGAGTGGA CCGTCAAGCT GACCCAGCGC GCGCAAGAGG CGCTGTTTGC TCGGGCGGTT
GCCCACTTCG AAACGCTGTG GGCCGACAGC GAGTTTCAGC GTTACGACCC GGACAACGTC
GCGCATCGGC AGGCACTGGC CGCTGCGCTC GGCCGCGAGT CCTTCGGCGG CGGCGAGCCC
ACTGCCACGA TCAGTTTCTT CGACCTCCAG CCCAAGACCT ATCAGCAAGA GATGCTGGAG
CAGTTGATCA CCGAGCGCAG CCACGGCCGC AACCGAAACC TATTGGTGGC GGCCACCGGC
ACCGGCAAGA CCGTGGTGGC GGCGTTCGAC TATCGCAACA CCTGCCGTGT TGAAGGCGGC
CGCCCTCGCC TGCTGTTTGT GGCCCACCGC GAGGAGATCC TGCGCCAGGC CCTGCGCACC
TATCGCGAAG TGCTGCGTGA CCCCGAGTTC GGCGACCTGC TCACTGGCGG CAACCAGCCC
GAACGATGGG ACCATTTGTT TGCCACCATC GACAGCGTGA CCAGCCGCGA CCTGGTGACC
ACCGTTGGCG CCGATCATTG GCACACCGTC GTGGTGGACG AGTGCCACCG GCTGGCAGCC
GATCGCTTCG ATGCCTTCGT CAAGTCGGTT CGCCCCAGCG TTTTGCTCGG CCTGACCGCG
ACACCCGAAC GCAGCGACGG GCAACCCATC GCGCAGTACT TCGATGCGCG CCCGGATGGC
AGCCCTGCCA TCGAGCTGCG GCTGTGGCAT GCGCTCGACC TGCAACTGCT GGCGCCCTTC
GAGTACTACG CCTGCGATGA CGGCACCGAT TTCTCAGCGG TGCCATGGGA CAAGCCGGGC
GAACGAGAGG CGGTGGACAA GCTCGTGACC GGCAATGACG TGCGTGCCCG GCTCGTCGTC
AATGAATGGC GCCGGCTGGC TTCTGACGCA TCGACATCAC GTGCCATCGT GTTCTGCGTT
TCGGTTGCAC ACGCCGAGTT CATGACCGAC CGGTTCAACC GCGCCGGCCT GCCGGCGGCC
TGCGTGGTCG GCACGACGGC GATTGAAGAG CGGCGCCGCG CGCCGCAACG CCTACTCAGC
GGCGAGCTTT GCGCGCTGGT GACGGTTGAC CTCTACAACG AGGGCATCGA CCTGCCGATG
GTCGACACCC TGTTGCTGCT GCGGCCCACA CAGAGCCCGG TGCTGTTCCA GCAGCAGATC
GGCCGCGGCC TGCGCTTGGC GCCGGGCAAG GAGAGCTGCC TGGTGCTCGA CTTCGTCGGC
CAGCATCGCA CCGAGTTTCG ATTTGATCGC CTGTTGTCGA GCCTGACCGG GTTGTCGCGC
CGCGAACTGG TGGATGGCGT CGAGAACGGA TTCGGCAGCC TGCCGCCGGG CTGCCACATC
CACCTTCAGC GGCAGACGCG AGAGCAGGTG CTGCAAGGCT TACGTGCGCT GACGACGCAG
AACTGGCGCC GCCTGAAGAC CGAGTTGCAG ACGTATGTGG CGCTGAAGGG CCGTGCGTCC
GTGCGCTTGG CGGACTTTCT GCATGACCAG GCGCTGGAGC TCGAAGACAT CTACCGCGCG
GGCACCGGCC AGGGCCGCAG CGGCTGGACG GCGCTCAAGC GCGACGCCGG CCTGATCGTC
GCGGAGCCCG GTCCGGAAGA GGACTACTTC AGCCGACGTT TTGCAGACCT GCTGCACGTG
GATGACCCGC GTCGGCTCGA CATGATGGCC GCGGTTGGCG CGAGGCAAGG CGACTCGGAA
GTGCTCGACA CCAAGAGTGC ATTGGGTGTG CAGATGCTGG CCTATCAGAT CGATGGCCGG
CATGCGCAGG CCGCCGGCCA CGAGGCTTTT GCCGAACGAC TGGCACGCCA CCCTGCCATC
GCCGCGGAGC TGGTCGAGTT GTCAGACCTG CTGCAGGCCC GAAGCAGCCT GGGCGCCAAC
GCATTGCCCG GTCTCGAAGA CACGCCGTTG TGCTTGCACG CCGCCTATGG CGCGCGTGAG
GTGCTCACGG CGGTCGGTTG GCTGACGGCA ACACGCCGTA CGCCATTCCA GGCTGGTGTA
TTGCCACTGA CCCACCGAAA GACCGAACTG CTGTTCGTGA CACTCGACAA GAGCGAGGGC
TACCACGACC GCATCTCGTA TCACGACTAT GCGATCAGCG CGGAGCGCTT CCATTGGCAA
ACACAGAACA GCGCCGGCCC GGACACGCCC GGCGGCCGGC GTTATCTGGA GAGTGAGAGC
AATGGCTGGC AATTCCAGCT TTTCGTGCGG CCGCGTAAAG GCGACGCCTA TCGGGCCTGC
GGGCGGGTGA CGCTGGAGTC GGCCGAGGGT GATCGGCCGA TGAGTATTGT CTGGCGGCTT
GACGTGCCGT TGCCTGCGAG GCTGTTCAGG GAGTTCAGTG TGCTGCGTGG GGTGTAA
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| Protein sequence | MALPDGLYDL LLTEGLSRSL ATIDPSSADV SALKGGAAEF LADVITRQLA TLLDDVAGDG
ADKATRQLEL VNELLVMLRQ RLNVGDGSTG AAGSAEVVDL VASPLRVLRA VQRNQQFPTS
PEIGLAVPWL FTAGKGSPSL LQEIRRELAS SDQVDILVSF ITVSGVRKLQ DVLQQITAKG
GNGQGQAGTR LRILTTTYTG ATEARALDEL ARLPGCEVRV SLDGRRTRLH AKAWLFQRKT
GFGSAYVGSA NLSGAALTGG LEWTVKLTQR AQEALFARAV AHFETLWADS EFQRYDPDNV
AHRQALAAAL GRESFGGGEP TATISFFDLQ PKTYQQEMLE QLITERSHGR NRNLLVAATG
TGKTVVAAFD YRNTCRVEGG RPRLLFVAHR EEILRQALRT YREVLRDPEF GDLLTGGNQP
ERWDHLFATI DSVTSRDLVT TVGADHWHTV VVDECHRLAA DRFDAFVKSV RPSVLLGLTA
TPERSDGQPI AQYFDARPDG SPAIELRLWH ALDLQLLAPF EYYACDDGTD FSAVPWDKPG
EREAVDKLVT GNDVRARLVV NEWRRLASDA STSRAIVFCV SVAHAEFMTD RFNRAGLPAA
CVVGTTAIEE RRRAPQRLLS GELCALVTVD LYNEGIDLPM VDTLLLLRPT QSPVLFQQQI
GRGLRLAPGK ESCLVLDFVG QHRTEFRFDR LLSSLTGLSR RELVDGVENG FGSLPPGCHI
HLQRQTREQV LQGLRALTTQ NWRRLKTELQ TYVALKGRAS VRLADFLHDQ ALELEDIYRA
GTGQGRSGWT ALKRDAGLIV AEPGPEEDYF SRRFADLLHV DDPRRLDMMA AVGARQGDSE
VLDTKSALGV QMLAYQIDGR HAQAAGHEAF AERLARHPAI AAELVELSDL LQARSSLGAN
ALPGLEDTPL CLHAAYGARE VLTAVGWLTA TRRTPFQAGV LPLTHRKTEL LFVTLDKSEG
YHDRISYHDY AISAERFHWQ TQNSAGPDTP GGRRYLESES NGWQFQLFVR PRKGDAYRAC
GRVTLESAEG DRPMSIVWRL DVPLPARLFR EFSVLRGV
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