Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4280 |
Symbol | |
ID | 6160627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4788753 |
End bp | 4790942 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641667057 |
Product | putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane |
Protein accession | YP_001793296 |
Protein GI | 171060947 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACAAC AGACCTTCCG TATCACGGCA GTCGCAGCCA GCGTGCTCAT GCTGGCCGCC TGCGGCGGTG GCGACAGCGC CGCCGTGACC CCGGCCGAGG CGATCAACGC CCTGCCCACG GCCGTGCGCG GCGCCGTGAC GGTGAGCACC TACGACGGCG CCACCGATGA CCTGCTCACC GCCGGCCTGG GCCGTGCCGG ACTGATGGGC GGGGCGCCGA CCTACGTCGA CGCCGCCGCA CCCACCGCCG CCGAGCTGCG CCGCAACGCG ATCTACAACA ACTACCGCGC GCTGGTCGAC CCCACCGCCC TCGGCGGCAT GGGCACGCTC TACGGCCCCA ACGTCGACAC CGCCGGCTCG GCGACCAACA ACGCCGGCCT GATCGCCGGG CGCGAATACA TCGCCTGGGC CGACGACGGC ACCGGCCGCC AGAACGTCAC GCTGATGGTG CAGGTGCCCA ACCACTTCGA CCCGGCGCGG CCGTGCATCG TCACCGCCAC CTCGTCGGGC TCGCGCGGCA TCTACGGCGC CATCGGCACC GCCGGCGAAT GGGGCCTCAA GCGCGGCTGC GCGGTCGCCT ACACCGACAA GGGCACCGGC AACGGCCTGC ACGACCCCAC CAGCGGCCTG GTGATGAGCC GCAACGGCAG CACCACCACC GCCACGGTGG CCGGGCTCGA ATCGATCTTC AGCCTGCCCG ACAGCCTCGC CAGCCTGAGC ACCTTCGTCG GCAGTTTCGC CAACCGGGTC GGCTTCAAGC ACGCCCACTC GCAGCAGAAC CCCGAGAAGG ACTGGGGCCG CAACACGCTC GACGCCGTGC GGCTGGCCTT CTACGTGCTC AACGAACGCT ACGGCGCCGT CAGCACCACC GACCCGACCA AGCGGCAGCA GACCTTCAAG GCGTCCAACA CGCTGGTGAT CGCGTCCTCC GTGTCCAACG GCGGCGGCGC CGCACTGGCC GCGGCCGAGC AGGACACCGA AGGCTTGATC GACGGCATCG CCGTCTCCGA GCCCAACGCC CAGCCCGGCA GCAACACCAC GCTGGCGATC CAGCAAGGCA CGGCCACGCC GGTGGCCACG CACAGCAAGC CGCTGATCGA CTACTTCACC TACGCCAACC TCTACCAGCC CTGCGCCGCC CTGTCGACGT CGGCCAGCAG CGGCACCGGG GTGGGCGCAG CCTTCTGGCC GGCGGCGTTC ACCACCTCGG CGCAGAACCG CTGCGCGATG CTCAAGGCCA AGGGCCTGAT CGCGGGTGAC ACGCTGGCAG CACAGGCCGA CGACGCGCTC GCAAAGCTCA ACCAGTACGG CTGGCAGAGC GAGCAGAACT TCTTCCACCA GTCGCACTTC CGGCTCGCCA CCAACGCGAT CGTCGTCACC TACATCAACA GCTACGGCCG CTTCAGCGTG ACCGACAACG TCTGCGGCTA CAGCATGGCC AACACCGACG CGGCCGGCGA CGTGATCGCG CAAGCTCCGG GAACCCAGGC CGGTCTGTTC GCCAGCGGTA ACGGTGTGCC GCCGACCGGC GGCGTCAACA TCGTCTACAA CAACTCGTTC CTCACCAGCA CCACCAGCGT CGCCAAGCTC GACTTCCTGG CGGTCTCGCC GTCGACCACG GTGGCCGACT TCGCGCTCGA CGGCGCGCTG TGCATGCGCT CGCTGGTGAC CGGCCTCGAT CCGGTCAACG GCGCGGCCCT GACCGGCACG CTCAAGGCCC AGTCGGACCG CGTCATCGCC GGCATCAACG AGGTGCAGCT CAGTGCCCGG TTGCGTGGCA AGCCGACCGT CATCGTGGCC GGCCGCACCG ACACGCTGCT GCCGGTCAAC CACACGGCGC GGGCCTACTT CGGCAAGAAC CAGCTGGTCG ACGGCAGCGC CGCCGCCAAC GTGCGTTATT ACGAGGTCAC CAACGCGCAG CACTTCGACA GCTTCATCGG CTTCGGCGCA CTGCTCGGCT ACGACACCCG CGTGGTGCCG CTGCATCCCT ACCTGTTCAA CGCGCTCGAC CTGATGTACG AGCACCTGCA GCGTGGCCAG GCCCTGCCGC CGAGCCAGGT GGTGCACACC ACGCCGCGAG CCAGCGGCGC CGATGCACTG ACGCGCACCC ACGTGCCGGC GATCGCCACC AGCCCGCTGG CGGCGAACCT GATCACGATG TCGGGTTCGA CGCTCAAGGT GCCCGACTGA
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Protein sequence | MQQQTFRITA VAASVLMLAA CGGGDSAAVT PAEAINALPT AVRGAVTVST YDGATDDLLT AGLGRAGLMG GAPTYVDAAA PTAAELRRNA IYNNYRALVD PTALGGMGTL YGPNVDTAGS ATNNAGLIAG REYIAWADDG TGRQNVTLMV QVPNHFDPAR PCIVTATSSG SRGIYGAIGT AGEWGLKRGC AVAYTDKGTG NGLHDPTSGL VMSRNGSTTT ATVAGLESIF SLPDSLASLS TFVGSFANRV GFKHAHSQQN PEKDWGRNTL DAVRLAFYVL NERYGAVSTT DPTKRQQTFK ASNTLVIASS VSNGGGAALA AAEQDTEGLI DGIAVSEPNA QPGSNTTLAI QQGTATPVAT HSKPLIDYFT YANLYQPCAA LSTSASSGTG VGAAFWPAAF TTSAQNRCAM LKAKGLIAGD TLAAQADDAL AKLNQYGWQS EQNFFHQSHF RLATNAIVVT YINSYGRFSV TDNVCGYSMA NTDAAGDVIA QAPGTQAGLF ASGNGVPPTG GVNIVYNNSF LTSTTSVAKL DFLAVSPSTT VADFALDGAL CMRSLVTGLD PVNGAALTGT LKAQSDRVIA GINEVQLSAR LRGKPTVIVA GRTDTLLPVN HTARAYFGKN QLVDGSAAAN VRYYEVTNAQ HFDSFIGFGA LLGYDTRVVP LHPYLFNALD LMYEHLQRGQ ALPPSQVVHT TPRASGADAL TRTHVPAIAT SPLAANLITM SGSTLKVPD
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