| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4119 |
|---|
| Symbol | |
|---|
| ID | 6163013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4626166 |
|---|
| End bp | 4626693 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641666897 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001793136 |
|---|
| Protein GI | 171060787 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.251082 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTTG CCCCACATCT TGCTGCGCTC GTGATCTCGG CATGCATTTT TCCTTCATGG
GCGGGGCCGC TCGAAGACGG TGTCGATGCC GTCAATCGCA AGGACTATCC GACCGCGATC
CGGCTGCTCG AGCCGCTGGC GCGCTCGGGC GATGCGCTGG CGCAGCTGCG GATCGGGCTT
CTGCACTATC ACGGCCATGG GGTGCGGGAG AACGATGCGA TGGCCTTGCA GTGGTTCGAA
CGCGCGGCCC GGCAAGGATT GGCTGAAGCG CAATTTCATC TAGGCAATAT GTATGCCTAT
GGATTGGCCG ATCCGGGCCA CGATGTCGAC CCGAGTCGGC TCGCCGCGCA GTGGTATTTC
GAGGCCGCGC GGCAGGGTCA CGCGCAGGCG CAGTACAGCC TGGGCATCCT GTTCCTGACC
GGCACCGGCG TGGTCCAGAG CCCGGAAGAA GCCGCGCGCT GGATCGAGCG CGCCGCCGCC
CAGGGCCATG CCGACGCCGC CGCCTACCTC AAGGGCAAGG CGCCCTGA
|
|---|
| Protein sequence | MSFAPHLAAL VISACIFPSW AGPLEDGVDA VNRKDYPTAI RLLEPLARSG DALAQLRIGL
LHYHGHGVRE NDAMALQWFE RAARQGLAEA QFHLGNMYAY GLADPGHDVD PSRLAAQWYF
EAARQGHAQA QYSLGILFLT GTGVVQSPEE AARWIERAAA QGHADAAAYL KGKAP
|
|---|
| |