Gene Lcho_4044 details

Gene Information

• Locus tag: Lcho_4044
• ID: 6160551
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4530201
• End bp: 4532135
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666822
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001793061
• Protein GI: 171060712
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 9
• Fosmid unclonability p-value: 0.0000000893288
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTTCAAAC TCGATCACCT GTCGATCTCG AAGAAGTTCT TGCTGCTGGG GGTGCTGGCC 
GTCGCGATGG CGCTGCCGCC GTCGGTCGGG CTGATCCGCA GCAAGCTGGC CACGATGAAC 
ACTGCCAGCG CCGAGGTGGC GGGGCTGCAG CCGATCAGCA GCCTGCTCGG TCTGCTGAAG 
GCGACACAGC AGCACCGCGG TGCGTCAGCC GGCGAACTGG GCGGCAACGA GGCGATGAAG 
GCCCGCCGCG CAGCCATCGA GCCGACCGTT CAGGCTGCGC TCGAGCAGGT CACCGCCGCC 
ACCCGGGCTT ATGAACTGCC TGGGCTGCTG CAGGACCGCG ACGCCGTGAC GTCGGCCTGG 
CAGTCCTTGC CCGGGGACGT GGTCAAGCGC GCCATCGACG GCCTCGAGAG TTTCAAGCGC 
CACACCGAGC TGATCGCGAT CCAGCTCGAT CTGCTGGTCG ACGTGCTCGA TGCCTCGGGC 
CTGAGCCTGG ACCCCGAGGC CCACACCTAC CACCTGACGA TGGCGGTGCT CAACGACCTG 
CCGCCGGTCA CCGAGGCGCT CGGCCAGCTG CGCGCCAGGG GCACCGCGGC GTTGGCGCGT 
GGCACCCTCA CGCCACAGCA GCGCGCCGAG ATGCAGGGCA CCCTGGCGCT GGCCCATGCG 
CGCGTGCGGT CGGCCGAGAA GAATTTCGAG AAGACCCGTG CCAGTCGCCC CGACATGGAC 
ATGACGGCGC TCAACGCCGC CCGCAGCGCC GCCGCCGCCA GCCTGGCGCA GATCGACCAG 
CGCATCACCG CGATGACCGA CGCCCAGGAG ATGCCGGCGA TCCCGCCCGA GGCCTATTTC 
GGCGAGACCA CGAAGGCCAT CGACCTGCAG TTCGCGCTCA TCGACACCGC CTTCCCGATG 
CTGCAGGGCG CGCTCGAGGC GCGTGTCGCC GAGGCGCGTT TCAGCGTCGC CTCGCTGGCT 
GCCCTGCTGC TGGGCATCAC GCTGGCGGGC GCCGCGATCA GCCTGGCCCT GGCGCGCAGC 
ATGCAGCGTT CGATGGCGCA GGCGGTGGCG GTGGCCGAGG CGGTCGCTGC CGGCGACCTG 
AGCATGCGGG TGCGCACCGA TGCGCGCGAC GAGGTCGGCG CCCTGCTCGG CGCGCTCGAC 
CGCATGAGCA CGAATCTTTC GCGCATGGTC GGCGAGGTGC GGGCCGGCAC CGACGCGATC 
GCCACCGCGT CGTCGCAGAT CGCCCAGGGC AACGCCGACC TGTCCAGCCG CACCGAGCTG 
CAGGCCTCGC ACCTGCAGCA GACGGCGGCG TCGATGGACC AGGTCAACGA CACCGTGCGC 
GCCAACGCCG ACAACGCCAA CGAGGCCAAC CGCATCGCCA GCCACGCCTC CGAGGTGGCG 
GCCGCCGGTG GCAAGGCCGT CAACCAGGTG GTGGCGACGA TGAACGGCAT CCAGGTCTCG 
AGCCGCAAGA TCGCCGACAT CATCGGCGTG ATCGACGGCA TTTCGTTCCA GACCAACATC 
CTGGCGCTCA ACGCCGCGGT CGAGGCCGCG CGTGCCGGCG AGCAGGGCCG CGGCTTCGCG 
GTGGTGGCCG CCGAGGTGCG CACGCTGGCG CAGCGTTCGG CCAACGCCGC CAAGGAGATC 
AAGACCCTGA TCGGCGACAG CGTCGAGAAG GTCGATGCCG GCAACCTGCT GGTGTCCGAC 
GCCGGCCAGA CCATCGGCGA CGTGGTCGAC CAGGTGCGCC GCGTCAACGA CCTGATGGCC 
GAGATCACCG CCGCCACGCA GCAGCAGCAG GACGGCACCA GCCAGATCAA CGCCGCGCTC 
GGCCAGCTCG ATCAGTCGAC CCAGCAGAAC GCCGCGCTGG TCGAAGAAAC CGCCGCCGCC 
GCCGAGAGCC TGCGCCAGCA GGCCACCCGC CTCACCGAGG TGATGGCGCA GTTCCGGCTC 
GCCGACGTGC ACTGA 

 

Protein sequence

MFKLDHLSIS KKFLLLGVLA VAMALPPSVG LIRSKLATMN TASAEVAGLQ PISSLLGLLK 
ATQQHRGASA GELGGNEAMK ARRAAIEPTV QAALEQVTAA TRAYELPGLL QDRDAVTSAW 
QSLPGDVVKR AIDGLESFKR HTELIAIQLD LLVDVLDASG LSLDPEAHTY HLTMAVLNDL 
PPVTEALGQL RARGTAALAR GTLTPQQRAE MQGTLALAHA RVRSAEKNFE KTRASRPDMD 
MTALNAARSA AAASLAQIDQ RITAMTDAQE MPAIPPEAYF GETTKAIDLQ FALIDTAFPM 
LQGALEARVA EARFSVASLA ALLLGITLAG AAISLALARS MQRSMAQAVA VAEAVAAGDL 
SMRVRTDARD EVGALLGALD RMSTNLSRMV GEVRAGTDAI ATASSQIAQG NADLSSRTEL 
QASHLQQTAA SMDQVNDTVR ANADNANEAN RIASHASEVA AAGGKAVNQV VATMNGIQVS 
SRKIADIIGV IDGISFQTNI LALNAAVEAA RAGEQGRGFA VVAAEVRTLA QRSANAAKEI 
KTLIGDSVEK VDAGNLLVSD AGQTIGDVVD QVRRVNDLMA EITAATQQQQ DGTSQINAAL 
GQLDQSTQQN AALVEETAAA AESLRQQATR LTEVMAQFRL ADVH