Gene Lcho_4033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4033 
Symbol 
ID6164083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4518275 
End bp4518934 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content70% 
IMG OID641666813 
ProductTetR family transcriptional regulator 
Protein accessionYP_001793052 
Protein GI171060703 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000000937448 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGACCTCCA CCAGCCTTGA GCAGCGCAAA TCCCGCGCCG GCGCCCGTTC CGCCCAGAAG 
GGCCAGCAGA CCCGCGCCTC GATCCTGGAT GCCGCCTTGG CCCTGTCGTC GCAGAAAGGG 
CTCGAAGGCC TGTCGATCGG CGCGCTGGCC GAGGTCACGG GCATGAGCAA GTCGGGCGTG 
TTCGCCCATT TCGGCTCGCG CGAGGAGCTG CAGATCTCGG TGATCCGCGA GTATCACAAC 
CGCTTCGAAG AAGAGATCTT CTACCCCGCC ATCCGCGAGC CGCGTGGCCT GGGCCGGCTG 
GTGGCGATGT TCGACCGCTG GATCCGGCGC GTCACGGTCG AGATCGACTC GGGCTGCATC 
TACATCAGCG GCGCGGTCGA GTTCGACGAC CGGCCCGGAC CGGTGCGCGA CGCGCTGGCC 
GACATGGTCC GCACCTGGCA CGCCGCGCTG CACCGGGCGA TCGAGATCGC CCGCGAGGTC 
GGCGATCTGC GCCCCGATAC CGATGCCCGG CAGATGGCGT TCGAGATGCA CGGCCTGATC 
CTCGCCCTGC ACCACGATGC CCGCTTCCTG CGCGAGCCCG GTGCGGTCGA ACGGGCGCGC 
CGCGGCTTCG AGCACATGCT CGCGCGCTAT GCCGTCGCCC CCGCGGACGG CTCGCGCTGA
 
Protein sequence
MTSTSLEQRK SRAGARSAQK GQQTRASILD AALALSSQKG LEGLSIGALA EVTGMSKSGV 
FAHFGSREEL QISVIREYHN RFEEEIFYPA IREPRGLGRL VAMFDRWIRR VTVEIDSGCI 
YISGAVEFDD RPGPVRDALA DMVRTWHAAL HRAIEIAREV GDLRPDTDAR QMAFEMHGLI 
LALHHDARFL REPGAVERAR RGFEHMLARY AVAPADGSR