Gene Lcho_3921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3921 
Symbol 
ID6161718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4406925 
End bp4407434 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content73% 
IMG OID641666699 
ProductCinA domain-containing protein 
Protein accessionYP_001792940 
Protein GI171060591 
COG category[R] General function prediction only 
COG ID[COG1546] Uncharacterized protein (competence- and mitomycin-induced) 
TIGRFAM ID[TIGR00199] competence/damage-inducible protein CinA C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCACG TCGAACAGCT CGAACACCAC GAGATACCGG CGCGGGTGCG GGCGATCAGC 
CTGCAACTGG TCGCCCGCCG GTGGCTGATG TGCACGGCCG AGAGCTGCAC CGGCGGCCTG 
ATCGCCGCGG CCTGCACCGA TCTGGCGGGT TCGAGCGACT GGTTCGAGCG CGGCATCGTC 
AGCTACAGCA ACGCGGCGAA GTGCGAGTTG CTGGGCGTGC CGGCCGACAC GATCGCCGCT 
CACGGCGCCG TCAGTTCGGC GGTTGCCGAG GCGATGGCAC GCGGCGCGCT GTCGCATTCG 
CACGCGCAGG TCGCGCTGGC GGTGACCGGC GTGGCCGGCC CGAGCGGCGG CAGCGTGGAC 
AAGCCGGTCG GCACGGTCTG GTTCGGCTGG GCCTTGCCCG GCGCGGCCTG GACCGCGAGG 
CAACGCTTCG ACGGCGACCG CCACGCGGTG CGGGTGCAGT CCGTCGCCCA CGCCTTGCAC 
GAACTCGACC GGGCGCTGCG GCGGGCCTGA
 
Protein sequence
MNHVEQLEHH EIPARVRAIS LQLVARRWLM CTAESCTGGL IAAACTDLAG SSDWFERGIV 
SYSNAAKCEL LGVPADTIAA HGAVSSAVAE AMARGALSHS HAQVALAVTG VAGPSGGSVD 
KPVGTVWFGW ALPGAAWTAR QRFDGDRHAV RVQSVAHALH ELDRALRRA