| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3830 |
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| Symbol | |
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| ID | 6161894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4292155 |
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| End bp | 4294053 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666603 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792849 |
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| Protein GI | 171060500 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.457691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTGA TCACCCTGCT TGACGCCAGT CTCGCCTACG GCCACGTGGC CTTGCTCGAC
CACGCGGCGA TGTCGCTGGA GACCGGCGAG CGGCTCGGGC TGATCGGGCG CAACGGCACC
GGCAAGTCGT CGCTGCTGAA GATCCTCGCC GGCCTCGAAG CCACCGATGA CGGCCTGGTG
CAGGTGCAGC AGGGCCTGCG GCGCGTCTAC GTGCCGCAGG AGCCCGAATT CGCGCCCGGC
ACGACGGTGT TCGAGACCGT CAGCGAAGGC GTGGCCGAGG CCAAGGCCTT GCGCGAGCGT
TTCGAGGCCC ACGCGCCCGG CGACGATCTC GACGCGCTGC AGACCCGCAT CGAGGCACTC
GACGGCTGGA ACTGGGAGCA GCGCGTCGAC GAGACGCTGC ACCGCCTGCA GCTCGACCCC
GACCTGCGTG TCGACGCGCT GTCGGGCGGC CTGCGCAAGC GCGTGGCGCT GGCGCGCGCG
CTGACCGCCG CGCCCGACGT GCTGCTGCTC GACGAGCCGA CCAACCACCT CGACCTGGAC
GCCATCATCT GGCTGCAGGA CCTGCTGATC GGCTTCCGCG GCGCGCTGCT GGTGATCACC
CACGATCGGG CCTTCCTCGA CGCCGTGGCC ACCCGCATCC TCGAACTCGA CCGCGGCACG
CTGCGCAGTT ATCCGGGCAG CTTCGCCGCC TTCGAGGCCG CCAAGGAGCG CGAGCTCGAA
GCCGACGCGC TGGCCAATGC GCGTGCCGAC AAGCTGCTGG CGCAGGAAGA GATCTGGATC
CGCAAGGGTG TCGAGGCGCG CCGCACCCGC AGCGTCAGCC GCATCACGCG CCTGCAGGGC
CTGCGCGAGC AGCGTGCGCA GCGCCGCGAC GTGGTCGGCC GCGCCCGGCT GGAGGTCGAT
GCCGGCGAGC GCAGCGGCAA GATCGTGGCC GAGCTCGACG GCGTCAGCAA GGCCTTCGGC
GAGCGCACGG TGGTGCGCGA CTTCACCGCC ACCATCCTGC GCGGCGACAA GGTCGGCCTG
ATCGGCAGCA ACGGCGCGGG CAAGACCACG CTGCTGCGCA TGATCCTGGG CCAGCTGGCG
CCGGATTCGG GCACGGTCAA GATGGGCACG CAGATCCAGG TGGCGTATTT CGACCAGATG
CGCGAGGCGC TCGACCTCGA CGCCACGCTG GTCAACACCA TCAGCCCGGG CAGCGAGTGG
GTCGAGATCG GCGGCGCGCG CAAGCACGTG ATGAGCTACC TGGGCGACTT CCTGTTCTCG
CCCCAGCGCG CCAACTCGCC GGTGCGCAGC CTGTCGGGCG GCGAGCGCAA CCGCCTGCTG
CTGGCGCGGC TGTTCGCCCG TCCGGCCAAC GTGCTGGTGC TCGACGAGCC GACCAACGAC
CTCGACATCG ACACCCTCGA ACTGCTCGAG GAACTGCTGC AGAGCTATCC CGGTACGGTG
TTCCTGGTCA GCCACGACCG CCGTTTTGTC GACGCGGTGG TGACCAGCAC GCTGGTGCAC
GAGGGCGACG GCCGCTGGCG CGAGTACGAG GGCGGCGTCG AGGACTGGCT GCGCCAGTCG
CAGCGCGCGG CGGCGATGGC CAAATCGACC GCGGCGGCTG CGGCCAAGAG CGCGGCGGCA
GCCCCGGCGA CCAGCGCGCC GGCTCCGGCC GTTGCCGCGC CAGCGGCTGC GCCGGCCAAG
CGCAAGCTCA GCTACAAGGA GCAGCGCGAA CTCGACGAGC TGCCCAAGCG CATCGACGCG
CTCGAAGCCG AGCAGAAGCT GCTGACCGAG CAGCTCAGCG GCACCGAGCT CTACAGCCAG
GGCGCCGCGC GCGTGACCGA GGTGCAGGCG CGTTCCGCAC AGATCGAGGA AACCTTGCTC
GAACTGCTGG AGCGTTGGGA AACGCTCTCG GCACGCTGA
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| Protein sequence | MALITLLDAS LAYGHVALLD HAAMSLETGE RLGLIGRNGT GKSSLLKILA GLEATDDGLV
QVQQGLRRVY VPQEPEFAPG TTVFETVSEG VAEAKALRER FEAHAPGDDL DALQTRIEAL
DGWNWEQRVD ETLHRLQLDP DLRVDALSGG LRKRVALARA LTAAPDVLLL DEPTNHLDLD
AIIWLQDLLI GFRGALLVIT HDRAFLDAVA TRILELDRGT LRSYPGSFAA FEAAKERELE
ADALANARAD KLLAQEEIWI RKGVEARRTR SVSRITRLQG LREQRAQRRD VVGRARLEVD
AGERSGKIVA ELDGVSKAFG ERTVVRDFTA TILRGDKVGL IGSNGAGKTT LLRMILGQLA
PDSGTVKMGT QIQVAYFDQM REALDLDATL VNTISPGSEW VEIGGARKHV MSYLGDFLFS
PQRANSPVRS LSGGERNRLL LARLFARPAN VLVLDEPTND LDIDTLELLE ELLQSYPGTV
FLVSHDRRFV DAVVTSTLVH EGDGRWREYE GGVEDWLRQS QRAAAMAKST AAAAAKSAAA
APATSAPAPA VAAPAAAPAK RKLSYKEQRE LDELPKRIDA LEAEQKLLTE QLSGTELYSQ
GAARVTEVQA RSAQIEETLL ELLERWETLS AR
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