| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3714 |
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| Symbol | |
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| ID | 6162194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4156410 |
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| End bp | 4157636 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666487 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001792733 |
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| Protein GI | 171060384 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.132208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGTA TGAATCGATC GATGCGGGTT TCGACCGGCT GGGTCCTGGC GCTGAGCGTG
CTGAGCGCGG CGTTGCTGGT GGCGTGTGGC GGTGGAACGG CAGCGCCCGG CGCGGCCGGC
CCGGGCGGCG GCGGCATGCC GCCGCCGCCG AGCGTGGGCG TGGTCACGGT GCAGCCGGCG
TCGGTCGGCC TGACCACCGA GCTGCCCGGC CGGCTCGAGG CCTGGCGCAC CGCGCAGGTG
CGGTCCCGCG TGGCCGGCAT CGTGCAGAAG CGCCTGTTCA CCGAAGGCAG CGACGTCAAG
GCCGGCCAGT CGCTGTTCCA GCTCGACGCC GCCAGCTTCC AGGCCCAGCT CGACAGCGCC
CTGGCCGTGC AGGCCAAGGC CGAGGCCAAC CTGGCGCAGG CGCAGTCCAC GCTCGACCGC
AACCAGCCGC TGGCCGCCGC CAAGGTCATC AGCCAGCAGG AGTGGGTGCT CAACCAGACC
GCGCTCAAGC AGGCCCAGGC CGATCTGGCC ACCGCCCGCG CCGCGGTGCA GACCGCCCGC
CTGAATGTCG AATACGCCGC GGTGCGCGCC CCGATCGGCG GCCACATCGG CCGCGCGCTG
GTGACCGAAG GCGCGCTGGT CGGCCAGGGC GAGGCCACGC TGATGGCCAC CATCCAGCAG
ACCGACCCGC TCTACGTCAA CTTCACGCAG TCGGCCAACG AGGTGCTGCG GCTGCGCCGC
GCGATCGAGG GCGGCTCGCT CAAGAAGCTC GGCAAGGACG GTGGTCGGCA GGCCGCGCCG
ATCCGCGTGG TGCTCGACGA CGGCAGCCTC TACCCGCTGC CCGGCAAGCT GCTGTTCACC
GACCTGAGCG TGGACGCCAC CTCCGGCCAG GTGACGCTGC GCGCCGAGCT GCCCAATCCG
CAGGGCCTGC TGCTGCCCGG CCTGTACGTC AAGGTGCGGC TGGAGCAGGC GCAGGCCGAT
CACGGCATGG TGCTGCCGCA GCAGGCGGTC ACCCGCGGCG TGGCCGGCGA CACGGTGCTG
GTGGTCGGGG CCGACCACTC GGTCAGCCAG CGCACGGTCA AGATCGGCTC GGCGCTGGGC
AACCAGTGGG TGGTGCTCGA CGGCCTGAAG CCGGGCGAGC AGGTGGTGGT CGACGGCTTC
CAGAAGATCC GGCCCAAGAC GCCGGTGACG CCGGTGCCGT GGGCGCCGCC GGCTGCGAGC
GCGGCCGTCG TGGCGGCCAG CCGCTGA
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| Protein sequence | MAGMNRSMRV STGWVLALSV LSAALLVACG GGTAAPGAAG PGGGGMPPPP SVGVVTVQPA
SVGLTTELPG RLEAWRTAQV RSRVAGIVQK RLFTEGSDVK AGQSLFQLDA ASFQAQLDSA
LAVQAKAEAN LAQAQSTLDR NQPLAAAKVI SQQEWVLNQT ALKQAQADLA TARAAVQTAR
LNVEYAAVRA PIGGHIGRAL VTEGALVGQG EATLMATIQQ TDPLYVNFTQ SANEVLRLRR
AIEGGSLKKL GKDGGRQAAP IRVVLDDGSL YPLPGKLLFT DLSVDATSGQ VTLRAELPNP
QGLLLPGLYV KVRLEQAQAD HGMVLPQQAV TRGVAGDTVL VVGADHSVSQ RTVKIGSALG
NQWVVLDGLK PGEQVVVDGF QKIRPKTPVT PVPWAPPAAS AAVVAASR
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