Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3577 |
Symbol | |
ID | 6163147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3994179 |
End bp | 3995261 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666350 |
Product | inner-membrane translocator |
Protein accession | YP_001792596 |
Protein GI | 171060247 |
COG category | [R] General function prediction only |
COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTCG AAAGACGCAG CCAGGCTTCC GCCGCGGCAA TGCTGCTGGC GCCGGTGGGC GCCGTGCTGT TCACGCTGGC GATCAGCGCG CTGCTGGTGC TGTGGGCCGG CGCGCCGGTC GGGCGCACGT TTGCAGCGAT GTTCGCGGGC GGCTTCGGCT CGGTGTTCGC GTGGAGCGAA ACGCTGACGC GCGCCGTGCC GCTGATCCTG ACCGGGCTGG CTGCCACGGT GGCGTTCAAG GCGCGGCTGT TCAACATCGG CGCCGAGGGG CAGCTCTACG GCGGCGCGCT GGCGGCGGTA GCGGTGGGCA GCCTGTTCGG CGAGAGCGGC TGGTGGTCGT CGAGCTGGCT GGTCTTCGTG TCGATGCTGA TCGCCGCGGC GCTGGCCGGT GCGGCGCTGC TGCTGGGGCC CGTGCTGCTG AAGGTGCGGC TGGGCGTCGA TGAAGTCGTC ACCACGCTGC TGATGAACTT CATCGTGCTG CTGGCGGTGT CGGCGCTGCT CGACGGGCCG ATGAAGGACC CGAGCGCGCT CGGCTGGCCG CAGAGCGTGG CGCTGCCCGC CGAGCTGGAA CTGGCGCGGC CGATCGAGGG CACACGCCTG CACAGCGGCC TGTTCATGGC GACCGGCCTG GCCGGTGCGC TGTGGCTGAT CTTCAAACAC TCGGTGCTGG GTTTCGACAT CCGCGCCACC GGCGCCAACG CCCGCGCCGC GGCGTTTGCC GGCGTGCCGG CGCTGCGCAC CGCGGTGCTG GTGGCGCTGC TGTCGGGCGC ATTGGCCGGG CTAGCCGGTG CGATCGAGGT GGCGGGCCGC GCCGGTTACG TCACGCTCGA CATGTCGCCC GGCTTTGGCT ACACCGGCAT CGTCATCGCG ATGCTGGCCG GACTGCATCC GCTGGGCGTG CTGGCGGCGA GCGTGTTCGT CGCCGGCGTG CTGGTCGGCG CCGACAGCAT GAGCCGCGCG GTCGGCGTGC CGACCTACAT CGCCGACGTG ATCGTGGCGA CCTCGCTGAT CGCCGTGCTG GTGGCCACGC TGCTGACGCA ATATCGTCTG CAACCGCGGC TGCGCACGGG CACCTCGACA TGA
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Protein sequence | MRLERRSQAS AAAMLLAPVG AVLFTLAISA LLVLWAGAPV GRTFAAMFAG GFGSVFAWSE TLTRAVPLIL TGLAATVAFK ARLFNIGAEG QLYGGALAAV AVGSLFGESG WWSSSWLVFV SMLIAAALAG AALLLGPVLL KVRLGVDEVV TTLLMNFIVL LAVSALLDGP MKDPSALGWP QSVALPAELE LARPIEGTRL HSGLFMATGL AGALWLIFKH SVLGFDIRAT GANARAAAFA GVPALRTAVL VALLSGALAG LAGAIEVAGR AGYVTLDMSP GFGYTGIVIA MLAGLHPLGV LAASVFVAGV LVGADSMSRA VGVPTYIADV IVATSLIAVL VATLLTQYRL QPRLRTGTST
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