| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3576 |
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| Symbol | |
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| ID | 6163146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3992516 |
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| End bp | 3994168 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666349 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792595 |
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| Protein GI | 171060246 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.993778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGTAC GAAGGGACAC CGGACCGAGC GCCGGGCCGC CCCAAGCCGG TCCGGATCCC
CTCGGGGGAT CGGCCGACGT ATCCGGCGGA CGAGGGGCAC CCGTCCTGCG GCTCCAGCAC
ATCAGCAAGC GCTTTGGTAC GCTGGTCGCC AACGACGACA TCTCGCTCGA ACTCGGGCGC
GGCGAGGTGC TGGCGCTGCT GGGCGAAAAC GGCGCCGGCA AGTCGACGCT GGTGTCGATC
CTGTTCGGCC ATTACATGGC CGACAGCGGC TCGATCGAGG TCTTCGGCCA GCCGCTGCCA
CCGGGCCAGC CGCGTGCGGC GCTGGCCGCG GGCATCGGCA TGGTGCACCA GCATTTCACG
CTGGCCGACA ACCTGAGCGT GCTCGACAAC GTCATGCTCG GCAGCGAACC GTGGTGGCAG
CCGTGGTCGA GGCGTGATGC GGCGCGCACG CGGCTGCTGG AGGCGGCGCA GCGTTTCGGC
CTGACGGTGC AGCCCGATGC GCGCGTGGGC AGCCTGTCGG TCGGCGAGCG CCAGCGGGTC
GAGATCCTGA AGGCGCTGGT GCGCGGTGCA CGCATCCTGA TCCTCGATGA ACCCACCGCG
GTGCTGACGC CGCAGGAGAG CGAGGCGCTG TTCCACACGC TGGCGCAGAT GGTGGCGCAG
GGGCTGTCGA TCATCTTCAT CAGCCACAAG CTCGGCGAGG TGCTGCGGGT GTCGCAGCGC
ATCGCCGTGC TGCGCGCGGG CAAGCTGGTA GCGCAAGCCG CGGCCGGCGA GGTGACGCAG
GCGCGGCTGG CGCTGTGGAT GGTCGGCCAT GCGATCGAGC TGCCGGCGCG CCGGCCGGCG
CAGCAGGTGG GCGAGGCGCT GTGTGCGCTC GACCGCGTCT GCACCGCGGC CGGCGGGCGG
GATCGGCTCG ATCACGTCTC GCTGGAGTTG TGCAGCGGCG AGATCGTCGC CATCGCCGGT
GTGTCGGGCA ATGGCCAGGT GGCGCTGGCC GAGGTGTTGA GCGGCATGCG TGCGGCGAGC
GCCGGCAGCG TGCGGTTTCT GGATGCCGAC CTGTCGCGCA ACCCGGCCGT GCTGGTCGAA
CAAGGGCTGG CGCGCATCCC CGAAGACCGC CACGCGGTGG GCGTGGTCGG CGACCTGCCG
GTGTGGGAGA ACGCGGTCAG CGAACGGCTG CGCAGCGGGG CGTTTTCGCG CCGGCTGCTG
GGGCTGCGCT GGGTGCGGCG TGCGGCGGCC AAGGCGCATG CGCAAAGCAT CCTCGACGAT
TTCGACGTGC GTGGCGCGGG GCCGCAATCG CCGGCCCGGG CGCTGTCGGG CGGCAACATG
CAGAAGCTCA TCCTCGGCCG GGCGCTGCGG GCGCCCGACG GCCGGCCGGC GCGGCTGATC
GTCGCGCATC AGCCGACCTG GGGGCTGGAC GTGGGCGCGG TCGCCTACGT GCAGCAGCAG
CTGATCGCCG CACGCGATGC GGGCGCGGCG GTGCTGGTGA TCTCGGACGA TCTCGACGAG
GTGCTGGCAC TCGGCGACCG TGTGGCGGTG ATGCACGCCG GCCAGCTCAC CGCCGCCTTG
CCCGGCGAAC AGTGGACCCG CGAGACGCTG GGCCTGGCGA TGGCAGGGGT CAACGTCGGG
CACGGCCACG GCGCACCGGC GGTCGCGGCA TGA
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| Protein sequence | MSVRRDTGPS AGPPQAGPDP LGGSADVSGG RGAPVLRLQH ISKRFGTLVA NDDISLELGR
GEVLALLGEN GAGKSTLVSI LFGHYMADSG SIEVFGQPLP PGQPRAALAA GIGMVHQHFT
LADNLSVLDN VMLGSEPWWQ PWSRRDAART RLLEAAQRFG LTVQPDARVG SLSVGERQRV
EILKALVRGA RILILDEPTA VLTPQESEAL FHTLAQMVAQ GLSIIFISHK LGEVLRVSQR
IAVLRAGKLV AQAAAGEVTQ ARLALWMVGH AIELPARRPA QQVGEALCAL DRVCTAAGGR
DRLDHVSLEL CSGEIVAIAG VSGNGQVALA EVLSGMRAAS AGSVRFLDAD LSRNPAVLVE
QGLARIPEDR HAVGVVGDLP VWENAVSERL RSGAFSRRLL GLRWVRRAAA KAHAQSILDD
FDVRGAGPQS PARALSGGNM QKLILGRALR APDGRPARLI VAHQPTWGLD VGAVAYVQQQ
LIAARDAGAA VLVISDDLDE VLALGDRVAV MHAGQLTAAL PGEQWTRETL GLAMAGVNVG
HGHGAPAVAA
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