| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3546 |
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| Symbol | |
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| ID | 6160937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3968084 |
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| End bp | 3969400 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666319 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001792565 |
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| Protein GI | 171060216 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0176083 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGATC TTGCCGATGA ATACGAGGCG CTGATCCAGT TCATGTACAT GGCCCCGGTC
GGGCTGGTGC AGGCCTCGAT GGATGGCGAG ATCGTGATGA TCAATCCGAT CTCGGCCCAG
TTGCTGATGC CGCTGTCGCG CGGTGGCGAC CTGAGCAACC TGTTTGCCGC GCTCGAAGGC
GTGGCGCCGC AGTTGCGCGC CCTGACGGCC AGCTTTGCCG CCTCGCACGG CATGGTGTGC
GACGGTCTGC GCATCCCGAT CACGGCCGGC GCGCGAGGCC TGTCCGACGC GCAGATGCTG
TCGATCAGCC TGCTCAAGCT CGACGAGACG CGCCTGATGG CGGTGCTCGG CGACATCACG
CAACAGGTCC GGCGCGAGCG GCTGCTGCGT CAGAACGAGG CCTGGCTGAA CGCCATCTTC
ACCGGCGTGA CCGACTACGC ACTCGTCAGC CTCGACGCCC GCGGCTGCAT CGACGACTGG
AATCCGAGCA TCGGCCGGGT CACCGGCTTT GCCCGCGAGG CCGTGCTCGG CCGACCCTAT
TCGATCTTCT ACCCCGAAGA CGCCACCACG CCCGAGCGCC TGCTCGACCG CCTGCGCGAG
GCCGATGCCA ACGGCTGGAG CCTCGACGAC GGCTGGCGCC TGCGGGCCGA CGGTTCGCGC
TTCTGGGGCA GCGCCCTGAT CGCACCGCTG CGCGAGCGCG AAGAGCCCCA TGTGCCAGCC
TCTGCAGGCC GGCCCGGCGA CACCGACGAG CCGGCCTATT GCCTGGTCTT GCGCGACATC
TCCGACAAAC GCGAGGCCTG CGAGCAGCAG CGCCAGGCCA ACGACTGCGA CCACCTGACG
GGCATCGCCA ACCGGCGGTC GTTTTTCGAG GCCGCAGAAC TCGAACTGAT GCGCGCGAGA
CAGTCGCCCC GGCCGCTGTC GATGATCCTG TTCGATGCCG ATCATTTCAA GCTCATCAAC
GACCGCCATG GCCATCACGC GGGGGATGCG GTGCTGCGTC ACCTGGCCGC CCTGCTCACG
GCCAACTTCC GGCAGGTGGA CGTGGTGGCG CGGGTGGGTG GCGAGGAGTT CGCGGTGCTG
TTGCCTTCCA CCGGACTGCA CGGCGCCGTG CGGGTGGCCA ACCGGCTGAG GCAGGCCGTC
GAGGCGCAGA CGGTGGAGGT CGATGGCGTC GAGATCCATT GCACCGTCAG CGGCGGTGTG
GCCACAATGG CGGCCGGCCT GAGCGGACTG GATGCCTTGA TGAAATGCGC CGACCAGGCC
TTGTACGCGG CCAAGGCGGC GGGGCGCAAT CGCATCGAAT CGGCCGCCCC TGCCTGA
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| Protein sequence | MPDLADEYEA LIQFMYMAPV GLVQASMDGE IVMINPISAQ LLMPLSRGGD LSNLFAALEG
VAPQLRALTA SFAASHGMVC DGLRIPITAG ARGLSDAQML SISLLKLDET RLMAVLGDIT
QQVRRERLLR QNEAWLNAIF TGVTDYALVS LDARGCIDDW NPSIGRVTGF AREAVLGRPY
SIFYPEDATT PERLLDRLRE ADANGWSLDD GWRLRADGSR FWGSALIAPL REREEPHVPA
SAGRPGDTDE PAYCLVLRDI SDKREACEQQ RQANDCDHLT GIANRRSFFE AAELELMRAR
QSPRPLSMIL FDADHFKLIN DRHGHHAGDA VLRHLAALLT ANFRQVDVVA RVGGEEFAVL
LPSTGLHGAV RVANRLRQAV EAQTVEVDGV EIHCTVSGGV ATMAAGLSGL DALMKCADQA
LYAAKAAGRN RIESAAPA
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