| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3520 |
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| Symbol | |
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| ID | 6162117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3934432 |
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| End bp | 3938784 |
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| Gene Length | 4353 bp |
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| Protein Length | 1450 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641666293 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001792539 |
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| Protein GI | 171060190 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0199259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTCG CTTCGCGCTC TCTTGCTCTC GTTCATCGCG GCCGCGCCCT CGCACAGCCC
CTCGTGTCAG GCCTGCTCCG GGCGGCCATC GGCGTCGCCA GTATCGTCGT CGCGGCTTGG
CTGACCTTGC AATGGGGAAT TCTCCCCCGC CTCGACCACT GGCGCCCCGA GATCGAGGCC
TGGAGCAGCA GGAGCCTGGG CCTGCCGGTA CGAATCGGCA CGCTGGCGGT GCGCGGCGAC
CTCTGGTCGC CGACGATCCT GGTGCGCGAC CTGCAGCTGC TGGCTGCCAA CGGCCAGCCC
GGGCTGCGGC TCGCCGACGT CGAAGCGGTC ATCACGCCCG GCTCGCTGCT GCCGCGTTCA
CTCACCGACT GGCGCCCGCA CCTGCGCCGC CTCAGCCTGC GTGGCGCCGA TCTGGCGGTG
CAGCGTCTGG ACGACGGCCG CTGGCAGCTG GCCGGCCTGG TGCTCGCCGA CGGTGACGGC
AGCACGGCCC GCCGCCTGGT CGACTGGCTG CTGCGCCAGG GCGAGGTCGT GATCGCCGCC
AGCACGCTCA CCTACGCCGA CACCCGCCTC GGTCCCGCCC CCGCACGCCT GAGCGACATC
GAGCTGCTCT GGCGCAACCG CCTCGGCCGC CATCGGCTCA CGCTCGGGCT CAGCGCGCCG
CCGGACTGGG GCGGCCCGCT GCGCGCCGAG CTCGACCTGC GCGAGCCGCT GCTCGCCGCC
GCCGGCCTGT GGCGCTCGGG CGACTGGGCG CGCTGGCGCA CCGACATCCA GGCGCAGCTG
CCCGCCGTGG CCCTGCGACG CGCCCAGGCG CTGCTGCCGC AGTCGGTCAC CAACGGCCGG
TCGTGGCAAG GTGGCAACGG CGCGCTGTCG CTGGCGCTGC GGCGCGACCA GGGCGAGTGG
CGCAGCGCCC GCATCACGGC CGATCTGCGC GACCTGCAGC TGTCGCCGGC CCCGGGCGCC
GAGCCGCTGC GCATCGCCCA GCTCGCCGGC ACGCTGGTGG CGCAGATCGA CGCCCGATCG
CTGCAGCTGC AGGCCAGCGA CTGGCAGCTG CAGCTGGCCG ACGGCGCTGC GCCCTCGGCC
ACACGAACCA CCGCCCCCGC CAGCAGCTGG TCGCTGAACT GGGATCGCAG CGACGCCGCC
CAGGCCCGGC ACACGCTGCA GGCCGACCGG CTCGACATCG CCACGCTCGC CACGCTGGTG
CCGGCGCTGG CCCAGGCGCT GGCGCCGTCG GCATCGACAT CCGCGCCGCC TGCCGCACCC
GGCTGGCTCG CAAGCAGCAG GCCGGCCGGC ACGCTGCGTG ACCTGGAACT GCAGTGGAAC
GCGCCCCCCG GCGCCGCGCC CACCTGGCGC GCCAGCGGCC GGCTCAACGG GCTGAGCCTG
CAGCCGGGCG AGCCGGCCGC ACCGACCGGC ACCGATCCGC CGGGCAGCGG CGTCGGACGG
CCCGGCCTCT CGCCGGCCGA TCTGCGCTTT CGCGCCAGCC AGGCCGGCGG CGAGGCCGAG
CTCGACATGC GCGCCGGCTG GCTGGCGTTT CCGGGCCTGT TCGAGGAGCC GCGCCTGCCG
CTCGATCGCC TGCAGGCCCA GCTGCGCTGG CGGCTGATCC CGGACGGCGC CTCGGCCCGG
CCCGCCGCGG TCGAGATCGA CGTGCGACAC CTGCAGGTCG ACAACGCCGA CCTGCGCGGC
GAGGCCAGCG GCCGCTGGCA GGTGCGGCTG ACGGATCGCG CCGTCGACGA CCGGGCCGCC
CGCGCCTGGG CCGCCTGGCC CGGCCAGCTC GAACTGCAGG CCCGGGTCGC CCAGGGCGAC
GCCACGCGGG TGCACCGCTA CCTGCCGCAG GCCATCCCGG CGGATGTGCG CCATTACGTG
CGCGACGCCG TGCGCGCCGG CCAGGTGCAC GACTGGCAGG CCCAGGTGCG TGGCGCCTTG
CGCGAGTTTC CGTTTGCCGA TCCGGCGCAG GGTCGCTTCG AGATCGGCGG CCGGGTGCGT
GGCGTCACGC TCGACTACGT GCCGGCCAGC CTCGGCCTGG CCGGCCCCGC CTGGCCGCGC
CTGAGCCAGC TCGACGGCGG CCTGCACTTC GAGCGGCTGG GCATGCAGAT CCGCCAGGCC
AGCGCCCGGC TGGCCGACAG CGGCCGCGGC GAGACGCTGT TGACCGGCGT CGACGGCGGC
ATCACCGACC TCGCCCATCA GCCCGAGCTC AAGCTCGAAG GCCGCGCCAG CGGGCCGCTC
GACGACATGC TGCACTACGT CGACCGCTCG CCGGTGGGCG GCTGGCTGGC ACAGGCGCTG
GCCCAGGCCA GCGGCAGCGG CGCCGCGGCG CTCGACCTGA AGCTGGCAAT TCCGCTGCTC
GACGCCGAGC GCAGCCGCGT CACCGGCCGG CTCGCGCTGG CGGGCAGCCA ATTCCAGATC
CATCCGCTGG TGCCGCGCCT GAGCGACGTG CGTGGCGAAC TGACCTTCAA CGAACAGGGC
TTCACGCTGC GGCCGACCCG CGCGCGCGCA CTCGGCGGCA GCGTGCTGCT GCAGGGCGGC
ATGGACGCCG ACCAGCCGGT GCGCCTGTCC GCCGAGGGCC AGGCCAGCGC CGAAGGCCTG
CGGCTGGCTG CGCCCCACGA GGCGCTGGCC ACGCTGGCGC GCCAGATGAC CGGGCAGGCG
CCGTACCGGC TGCAGATCGC GATCGATCGC CAGGGCACGC GCGTCGACGT CGCCAGCGCG
CTGACCGGCC TGGCGCTGCA GCTGCCCGCC CCGCTCGGCA AGAGCGCCGA ACTGGCCTGG
CCGCTGCGCC TGCAGGTCGA CGACACGACA CCCGGCGAGG GCTCGCGCTG GTCGCTGCGG
CTGGCCGACC GGGTGGCCGC ACGCTGGCAG ACCGAAGCCA CCGGCGCGAT GCCCGAGCGC
GGCTGGCTGC AGGTCGGCCA GGCCACCCGC GACGCCATGC CCGCCCTGCC GAGCGAAGGC
TGGAGCGTGT CGCTGGCCGA CGCCCGGCTG TCCATCGACG CCTGGACGCA GTGGTTCGAC
CGCTTGGGCG AGCGGCCTGG CGGCGCGTCC GCCGCCGCAC CGGCCCGGCC CTCCGACCGC
ACCGAGTCGC TGGCCGCGCT GCACGACGTC AGGCTGCAAC TGGGTGAACT CGAATGGCGC
GGCCGGCGCT TCCATCAGGT CGACGCGCGG CTGGTGCAGA GCGCCGGCAT CGACGGCCAG
CACTGGAACG GCCGCGTCGA GGCGCAGGAG CTGGCCGGCG ACATCGAGCT GCGACTGCCG
CCGCAGCCGA GCCAGCCGGC CCGGATGCGC GCCCGGCTGA CGCGGCTCAC GCTGGCCCGC
GCGGACGGCG GCGCCTCGGC ACCGACGCGG GCATCGGCGC CCATGCAGTC CTTCGACCCG
ATCGCCGAGC CGACGCCTGC CGCGAGCGCG ACGGACGGCG CCACCGCCCG CGCCTCGCCG
CTGCCGAGCC TCGACATCGA GGTCGAGCAG TTCCAGCTCG GCCAGCGGCC GATGGGCCGG
CTGGTGCTGC GCGCCGGCCA CCGGCCCGGC AGCCGCGCCG GCGCCTGGCA CGACGAGTGG
CAGATCGACC AGCTCTCGCT GCAGACCCCC GACGCACGGC TGGCGGCCAC CGGCGTCTGG
CAGACCACGC CCGGCGCGGC GGGCGTGCCG CTGTCGGCGC TCGAACGCAG CGGCAGCACG
CGGCTGAACT TCAAGCTCAC GCTCGACGAC AGCGGCGCGC TGCTGGACCA GCTCGGCTGG
CCCGGCACGG TCCAGGGCGG CAGGGGTTCG CTGCAGGGGC GCATCGGCTG GCCGGGCTCC
CCGTTCGATC CGTCGGTGCG CCAACTCGAC GGCCAGCTGC GCATCGATCT CTCGGCCGGG
CAGTTCCTGC AGGCCGATCC GGGCGTGGCC AAGCTGCTGG GCATCCTCAG CCTGCAGTCG
CTGCCACGGC GCTTTCTGCT CGACTTCCGG GATCTGTTCC AGCAGGGTTT CAGCTTCGAC
CAGATCGACG GCGACGTCGA CCTGCAGGCC GGCCTGGCGC GCACCCGCAA CCTGCGCATG
CGCGGCGTGC AGGCGCTGGT GCTGACCGAG GGCGAGGCCG ACCTGAACGC CGAGACGCAG
GACCTGCACG TCTGGATCGT GCCGGATCTG GACGCCGGCG CCGCCTCGCT GGCCTACGCC
GTCATCAACC CGGCCGTCGG CCTGGGCACG CTGCTGGGCC AGCTGTTCCT GCGCAGATCG
CTGACCGAAG CGGCCACCCG CGAGTTCCGC GTCGGCGGAA CCTGGGACAC GCCCTCGGTC
ACGCCGATCG GCCGCCAGCA GGGTCGGCCG CTGCCGCAAC CGACCGGCGA TCCGGCCGAG
GCGGCGGCGT CGCAGCCGGC CACGCAGCCG TGA
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| Protein sequence | MSLASRSLAL VHRGRALAQP LVSGLLRAAI GVASIVVAAW LTLQWGILPR LDHWRPEIEA
WSSRSLGLPV RIGTLAVRGD LWSPTILVRD LQLLAANGQP GLRLADVEAV ITPGSLLPRS
LTDWRPHLRR LSLRGADLAV QRLDDGRWQL AGLVLADGDG STARRLVDWL LRQGEVVIAA
STLTYADTRL GPAPARLSDI ELLWRNRLGR HRLTLGLSAP PDWGGPLRAE LDLREPLLAA
AGLWRSGDWA RWRTDIQAQL PAVALRRAQA LLPQSVTNGR SWQGGNGALS LALRRDQGEW
RSARITADLR DLQLSPAPGA EPLRIAQLAG TLVAQIDARS LQLQASDWQL QLADGAAPSA
TRTTAPASSW SLNWDRSDAA QARHTLQADR LDIATLATLV PALAQALAPS ASTSAPPAAP
GWLASSRPAG TLRDLELQWN APPGAAPTWR ASGRLNGLSL QPGEPAAPTG TDPPGSGVGR
PGLSPADLRF RASQAGGEAE LDMRAGWLAF PGLFEEPRLP LDRLQAQLRW RLIPDGASAR
PAAVEIDVRH LQVDNADLRG EASGRWQVRL TDRAVDDRAA RAWAAWPGQL ELQARVAQGD
ATRVHRYLPQ AIPADVRHYV RDAVRAGQVH DWQAQVRGAL REFPFADPAQ GRFEIGGRVR
GVTLDYVPAS LGLAGPAWPR LSQLDGGLHF ERLGMQIRQA SARLADSGRG ETLLTGVDGG
ITDLAHQPEL KLEGRASGPL DDMLHYVDRS PVGGWLAQAL AQASGSGAAA LDLKLAIPLL
DAERSRVTGR LALAGSQFQI HPLVPRLSDV RGELTFNEQG FTLRPTRARA LGGSVLLQGG
MDADQPVRLS AEGQASAEGL RLAAPHEALA TLARQMTGQA PYRLQIAIDR QGTRVDVASA
LTGLALQLPA PLGKSAELAW PLRLQVDDTT PGEGSRWSLR LADRVAARWQ TEATGAMPER
GWLQVGQATR DAMPALPSEG WSVSLADARL SIDAWTQWFD RLGERPGGAS AAAPARPSDR
TESLAALHDV RLQLGELEWR GRRFHQVDAR LVQSAGIDGQ HWNGRVEAQE LAGDIELRLP
PQPSQPARMR ARLTRLTLAR ADGGASAPTR ASAPMQSFDP IAEPTPAASA TDGATARASP
LPSLDIEVEQ FQLGQRPMGR LVLRAGHRPG SRAGAWHDEW QIDQLSLQTP DARLAATGVW
QTTPGAAGVP LSALERSGST RLNFKLTLDD SGALLDQLGW PGTVQGGRGS LQGRIGWPGS
PFDPSVRQLD GQLRIDLSAG QFLQADPGVA KLLGILSLQS LPRRFLLDFR DLFQQGFSFD
QIDGDVDLQA GLARTRNLRM RGVQALVLTE GEADLNAETQ DLHVWIVPDL DAGAASLAYA
VINPAVGLGT LLGQLFLRRS LTEAATREFR VGGTWDTPSV TPIGRQQGRP LPQPTGDPAE
AAASQPATQP
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