Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3456 |
Symbol | |
ID | 6159873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3858035 |
End bp | 3859120 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666231 |
Product | inner-membrane translocator |
Protein accession | YP_001792479 |
Protein GI | 171060130 |
COG category | [R] General function prediction only |
COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0696875 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAGC TTGAAGCGCG CCCGCAGCCG TCGCGGGTCA TGTCGCTGGC CTCGCCGCTG CTGGCGCTGG TGATCACGGT GCTGCTGGGC ATCGTGCTGT TCCTGCTGCT GGGCAAGGAC CCGGTGCGCG GCCTGCAGAT GTTCTTCGTC GAGCCGCTCA AGAACGCCTA CGCGCTGTCG GAGCTGAGCG TGAAGGCGGT GCCGCTGGTG CTGATCGCGC TCGGCCTGGC GGTGTGTTTC CGCTCCAACC TGTGGAACAT CGGCGCCGAG GGGCAGTACA TCCTGGGCGC GCTGGCCGGC GGCTGGGTGG CGATGCAGGC CGGGCCCGAG ACGGCCTGGA TGGGCCGCGG CATCGTGGTC GCGATCCTGC TCGCGGGCGT GCTGGGCGGC ATGGTCTGGG CCGGCATCGT GGCGCTGCTG CGCGACCGCT TCAACGCCAG CGAGATCCTC GTCAGCCTGA TGCTGGTGTA CGTGGCCGAG ATGGTGCTGA GCTACCTGGT CTACGGGCCG TGGAAGGACC CGCTGGGCTA CAACTTCCCG CAGACCATCA CCTTCGACGC CATCACCAAG GTGCCGCGCC TGATCGACGG TCTGCGCCTG AACGCCGGCA CGCTGATCGC GCTGGTGGCG GTGGCGGCGT TCACGGCCTT CCTGTTTCGC ACCTACCGCG GCTTCGCGCT GCAGGTCGGC GGGCTGGCGC CGGCGGCGGC GCGTTACGCC GGTTTCTCGT CGCGCACCGC GCTGTGGACG GCCTTGCTGA TCTCGGGCGG CATGGCCGGC CTGGCCGGTG CGCTCGAAGC CGCCGGGCCG CTGGGGCAGC TGACGCCCTA CGTGCCGGCG GGCTACGGCT TCGCCGCCAT CATCGTCGCC TTCGTCGGCC GGCTGCATCC GGTCGGCATC GTGTTCTCGG CGGTGCTGAT GAGCATGTTC TACATCGGCG GCGAGCTGGC GCAGTCGCGC CTGGGCCTGC CGAAATCGCT GACCGGCGTG TTCCAGGGCC TGCTGCTGTT CTCGCTGCTG GCCTGCGACA CGCTGATCGC CTACCGCATC CGCTGGGTGC GGCCGCAACT CCTCAAGACC GCCTGA
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Protein sequence | MLKLEARPQP SRVMSLASPL LALVITVLLG IVLFLLLGKD PVRGLQMFFV EPLKNAYALS ELSVKAVPLV LIALGLAVCF RSNLWNIGAE GQYILGALAG GWVAMQAGPE TAWMGRGIVV AILLAGVLGG MVWAGIVALL RDRFNASEIL VSLMLVYVAE MVLSYLVYGP WKDPLGYNFP QTITFDAITK VPRLIDGLRL NAGTLIALVA VAAFTAFLFR TYRGFALQVG GLAPAAARYA GFSSRTALWT ALLISGGMAG LAGALEAAGP LGQLTPYVPA GYGFAAIIVA FVGRLHPVGI VFSAVLMSMF YIGGELAQSR LGLPKSLTGV FQGLLLFSLL ACDTLIAYRI RWVRPQLLKT A
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