Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3380 |
Symbol | |
ID | 6163364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3756975 |
End bp | 3758048 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666155 |
Product | putative zinc protease protein |
Protein accession | YP_001792403 |
Protein GI | 171060054 |
COG category | [R] General function prediction only |
COG ID | [COG4324] Predicted aminopeptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCGC GTGCCGCCCG GGTCGCATTG GTCGTAGTTG CCGCCGTGGC TTTGAGCGGC TGCGCGCAGA TCGGCTATCT GTGGCAGTCG ACCGGCGGCC ACCTCAAGCT GCTGAACGCC GCCAAGCCGG TCGACGAGGT GCTGGCCGAG CCCGGCCTGG CGCCGGCCCT GCGCGAGCGG CTCGAACTCA GCCAGCGCCT GCGCGATTAC GCCGTCACCG CGCTGCACCT GCCCGACAAC GCCAGCTACC GCCGCTACGC CGATCTCGGC CGCAGCGCCG CGGTCTGGAA CGTGGTGGCC GCGCCCGAGC TGAGCCTGCA GCTCAAGACC TGGTGTTTCC CGGTGGTGGG CTGCGTCGGC TACCGCGGTT ATTACGCCCA GGCTGATGCG CAGGTCGAGG CTGATGAGTT GAAGGCGCAG GGCCTTGAAA CGATGGTCTA CGGCGTGCCC GCGTATTCGA CGCTCGGCAA GATCCCGGGC CGTTTCTTTG CCGATCCGCT GCTCAACACC TTTGTCACCA GCTACAGCGA GATCGAGCTG GCGCGGCTGA TCTTCCACGA GCTGTCGCAC CAGGTGGCGT ATGCGTCGGG CGACACCACC TTCAACGAGT CGTTCGCCAC CGCGGTCGAG CGCATCGGCA GCGCCCGCTG GCTGGCCGAA CAGCCGGCGG CGCAGCAGGA GCGCATCCGC ACCCAGAGCG CGCAGGCGGA CGCGCGGCGC GACGACTTCC GGCGCCTCAC GATGGCGCTG CGCCAGGACC TCGACGCGAT GTACCGCAGC CCGATCGGCG ACGACGAGAA GCGCCGCCGC AAGGCCGAGC TGATCGAGCG CGCGCGCGCC GAACATGCCG CGCTGAAGGC CGGCGCGTGG GGCGGTTTTG CCGGCTACGA CGGCTGGTTT GCCGGCATCA ACAACGCCCG CATCGGCGTG CTGGCGGCCT ACAACGCGCA GGTCGGCGAT TTCGAGCGCC TGTTCGAGCG CCAGGGCCGC GACTGGCCAC GTTTCTACGC CGAGGTGCAG CGCCTGGCCG CCTTGCCCGC CGCCGAGCGA ACGGCCGCGC TGGCGCGGCC CTGA
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Protein sequence | MSARAARVAL VVVAAVALSG CAQIGYLWQS TGGHLKLLNA AKPVDEVLAE PGLAPALRER LELSQRLRDY AVTALHLPDN ASYRRYADLG RSAAVWNVVA APELSLQLKT WCFPVVGCVG YRGYYAQADA QVEADELKAQ GLETMVYGVP AYSTLGKIPG RFFADPLLNT FVTSYSEIEL ARLIFHELSH QVAYASGDTT FNESFATAVE RIGSARWLAE QPAAQQERIR TQSAQADARR DDFRRLTMAL RQDLDAMYRS PIGDDEKRRR KAELIERARA EHAALKAGAW GGFAGYDGWF AGINNARIGV LAAYNAQVGD FERLFERQGR DWPRFYAEVQ RLAALPAAER TAALARP
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