Gene Lcho_3254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3254 
Symbol 
ID6163580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3611022 
End bp3611621 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content71% 
IMG OID641666028 
ProductTetR family transcriptional regulator 
Protein accessionYP_001792277 
Protein GI171059928 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACCC GACTGTCCAC CGAGGAGCGC CAGACCGAGA TCGTCGCCGC GGCCTTGCGC 
CTGGCCGAGG CGTTCAGCCC GGCCCGGATC ACGACCGGCG AGATCGCCGC GGCGGTGGGC 
GTCAGCCAGG GGGCGGTGTT CAAGCACTTC TCCAGCAAGG AGGCGATCTG GCTGGCGGCG 
ATGGGCCGGG TCCGGACGCA GCTGCTGCAG TCGCTCGACG CGGCGGCGCA GGCGGCGGCC 
ACGCCGCTGG CGGCCTTGGC GGCGGTGTTC AGGGCCCATG TCGATTTCGT GGTCGCCCAT 
CCCGGCGTGC CGCGGCTGAT CTTCCATGAG CTCGAGCAGC CGGCCGACTC CGCCGTCAAG 
CAGGAGGTGC GGGCGCTGCT GCAGGCCTAT CGCAAGCTGC TGCTGCGCCT GCTCGACGCC 
GCCGTGCGCC AGGGCCAGGC CAGCGCGGTG CTCGACCAGG AAGCGGCCGC CACGCTGTTC 
GTCGGCATCG TGCAGGGCCT GGTGATGCAG TCGATGCTGA GCGGCAAACC CGCCACGATG 
AAAGCCCAGG CCGATCGCGT GTTCGCCCTC TATCTGCACG GCATCTGCGA GGTCTCATGA
 
Protein sequence
MPTRLSTEER QTEIVAAALR LAEAFSPARI TTGEIAAAVG VSQGAVFKHF SSKEAIWLAA 
MGRVRTQLLQ SLDAAAQAAA TPLAALAAVF RAHVDFVVAH PGVPRLIFHE LEQPADSAVK 
QEVRALLQAY RKLLLRLLDA AVRQGQASAV LDQEAAATLF VGIVQGLVMQ SMLSGKPATM 
KAQADRVFAL YLHGICEVS