Gene Lcho_3235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3235 
Symbol 
ID6162750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3588138 
End bp3588815 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content69% 
IMG OID641666009 
ProductTonB family protein 
Protein accessionYP_001792258 
Protein GI171059909 
COG category 
COG ID 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTTG TCCAACCTGA TACGAATCCG ACCCGCAAGA CCGTGGGCAT GGGCATCGCG 
GTCGTCTTCC ATGTCGCCCT GGTGTGGGCC TTGGCCAATG GGCTGGGGCG GCAGGTGATG 
AAGGTCATCA GCGAGCCCAT CGAGACCCAG CTCATCGAGG AGGTCAAGCC GCCGCCGCCA 
CCACCCAAGG TGATCGAGAT GCCGCCGCCG CCGAAGTTCA CGCCGCCGCC GCCGGCCTAT 
GTGCCGCCGC CGGAGGTGCA GGTGCAGGCG CCGCCGCAGC CGCAGCCCAC GATCACCGCG 
ACAGTGGCCG AAACGCCGCC ACCCGCACCG CCCGAGCCGG TGCGCGCAGC ACCGGCGCCG 
GCCGCACCGC CTGCACCTGC GCCAGTGCCG GCACCTGCGC CGGCACCCGT GTCGGCGTCG 
GTGGCCTGCT CCAACTACGC GCAGGTGATG GGCGATGCGG GTTTCCCGCG CGAAGCGACC 
CGCCTCGGTC TCGAGGAAGG CACGGCGCTG GTCCAGTTCA CCCTTGCGGC CAATGGCGAG 
GTCAAGGACA TCAAGGTGGT CAGCGCGTCG CACCCCAGCT TCGCCAAGGG CAGCGTGCGC 
ATCGTGTCCG AATACAAGTG CAAGGGTCAG GGACGCGATG TCACGGTCCA GGTGCCGTTT 
GTCTACAAGT CCAGCTGA
 
Protein sequence
MSFVQPDTNP TRKTVGMGIA VVFHVALVWA LANGLGRQVM KVISEPIETQ LIEEVKPPPP 
PPKVIEMPPP PKFTPPPPAY VPPPEVQVQA PPQPQPTITA TVAETPPPAP PEPVRAAPAP 
AAPPAPAPVP APAPAPVSAS VACSNYAQVM GDAGFPREAT RLGLEEGTAL VQFTLAANGE 
VKDIKVVSAS HPSFAKGSVR IVSEYKCKGQ GRDVTVQVPF VYKSS