Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3043 |
Symbol | |
ID | 6161570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3360526 |
End bp | 3361215 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641665818 |
Product | Rhs element Vgr protein |
Protein accession | YP_001792068 |
Protein GI | 171059719 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000160638 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCACCGCG ACCCCGTCTT CAGCCCACCC CCCGCCTGGA CCCACGGCGG CTTCCTGGCG CGGGTGGTTT CGCTCGACGA CCCCGAGCGG CGCAACCGCG TGCAGGTGCG CCTGCTCGCC TTCGACGCCG TGGCGCAGCA GGACGCGCCG CTGTGGGCGC GCGTGGTGGC GCCGTTCGCC GGTGACGACC GCGGCGTGTT TTTCCTGCCC GATGTCGACG ACGAGGTGCT GGTGGTGTTC GTGCAGGGCG ATGCGCGTTA CCCGCTGATC GTCGGCGGCC TGTGGAACGG CGGGGCGCAG TCGCCGGCCG ACATCGAGTC GGGCGGTCAG AACCGCTACA AGCGCATCAA GTCGAAAAAC GGCATCGTCA TCACGCTCGA CGACCAGAGC GGCCAGGAGA CGCTCCAGCT CGAAACGCCG GGTGGCCAGA AGCTGACGCT GAAAGACGGC CCCGGCACGG TGACGATCGA GGACAGCAAC GGCAACAGCA TCAAGCTCGA AGCGGCGGGC ATCACCGTGC AGGCCAGCGC CAAGGTCAAG GTGCAGGCGG CGCAGGTGGA GGTGACGGCC GGCATGGTCA AGGTCGACAC CGCGATGGCC ACCTTCACCG GCATGGTCAA GTGCGAGGTG CTGCAGGCCA CCTCGGTGAT CTCCACCAGC TACACACCGG GAGCGGGCAA TGTCTGGTGA
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Protein sequence | MHRDPVFSPP PAWTHGGFLA RVVSLDDPER RNRVQVRLLA FDAVAQQDAP LWARVVAPFA GDDRGVFFLP DVDDEVLVVF VQGDARYPLI VGGLWNGGAQ SPADIESGGQ NRYKRIKSKN GIVITLDDQS GQETLQLETP GGQKLTLKDG PGTVTIEDSN GNSIKLEAAG ITVQASAKVK VQAAQVEVTA GMVKVDTAMA TFTGMVKCEV LQATSVISTS YTPGAGNVW
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