Gene Lcho_2698 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2698 
Symbol 
ID6162376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2969235 
End bp2969933 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content65% 
IMG OID641665475 
ProductGntR family transcriptional regulator 
Protein accessionYP_001791728 
Protein GI171059379 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.132882 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCATA ATTATGAATT CAAGTCTGAC TCCAAAACGA CATCCGCCGT GTCATTGCCC 
ACCGCCGAAA CCAGTCTCTC GCCGCGCGCC CTCTACCAGG ACGTGGCCGA GCGCCTGCGC 
GAGCAGATCT TCAATCGCGA ACTGGAGCCG GGCAGCTGGA TCGACGAGCA GAAGCTGACG 
GCCGAGTTCG GCATCAGCCG CACGCCCCTG CGCGAAGCAC TGAAGGTGCT GGCGGTCGAG 
GGGCTGGTGA CGATGAAGGT GCGGCGCGGC GCCTATGTCA CCGAGATGTC GACGCAGGAC 
GTGAAGCAGG TCTATCACAT CATGGCGCTG CTCGAGGCCG ATGCCGCCGC CGAGGTGGCC 
ACCCACGCCA GCGAGGTCCA GCTGGCCCAG TTGCGCGCCC TGCACAACCA GCTCGAGCGC 
GAGGTGCAGC AGCGCGAGTT CTTCTTCGCC ACCAACGAGG CGTTCCACGC CCAGATCCAG 
CTGCTGGCGG GCAACCGCTG GCGGATGCAG ATCGTCAACG ACCTGCGCAA GGTCATGAAG 
CTCAACCGCC ACCACTCGCT GTTCAAGCAG GGCCGCATCG ACGAGTCGCT GGCCGAACAC 
CGCGCGCTGA TGGCGGCCAT CGAGCGGCGC GACCCCGAGG CCGCACGCTG CCTGATGCAT 
GCCCATTTCG AGAACGGCCT GGCCGCCGCC GCAGATTGA
 
Protein sequence
MMHNYEFKSD SKTTSAVSLP TAETSLSPRA LYQDVAERLR EQIFNRELEP GSWIDEQKLT 
AEFGISRTPL REALKVLAVE GLVTMKVRRG AYVTEMSTQD VKQVYHIMAL LEADAAAEVA 
THASEVQLAQ LRALHNQLER EVQQREFFFA TNEAFHAQIQ LLAGNRWRMQ IVNDLRKVMK 
LNRHHSLFKQ GRIDESLAEH RALMAAIERR DPEAARCLMH AHFENGLAAA AD