| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2613 |
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| Symbol | |
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| ID | 6162773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2864359 |
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| End bp | 2865507 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665389 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001791643 |
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| Protein GI | 171059294 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.95954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGAG CCGCGCCCGC TCACGCGCCG GCCTCTCGCG TCGCACGCAG CCCCGGCGCC
AAGCCGGCCG TGGCGGCAGC GCGTGCGAGC GGGCTCGCGG TGTCGACCTT GCGGGACGCA
CGTCTCGATG AAGAGCAGTT CTCCCACGAC CTGGCGCTGA TGCTGCGCTC CGGCCTGAGC
CTGATCGAGG CCCTGCGCAC CGTGGCGGAG CGCCAGCACG GCAGCGCCGC CACCGCCATG
CAGCGCCTGC TCGAGGCGCT GAGCCAGGGC GAGACGCTGT CGACCGCCCT GCAGTCGAGC
GGCCAGTTCA GCACCGCGAT GCTGGCCTGC GTCAAGGCGA GCGAACTCAC CGGCGACCTG
GCCGACAGCC TGGGCCGCTT CGCCCAGAAC GCCACCCGGA TGCGCCAGCT GCGCTCGCGC
CTGGTCTCGG CCTGCGTCTA CCCGGGGCTG CTGATCACGG TGGCGTCGCT GGTGGTGCTG
TTCCTGCTGA TCTACGTCGT GCCGCGATTC GCGATGGTGC TCGAAGGCGC GGCACGCGAC
ATGTCGCCGA TGTCGCGGCT GCTGATCGAC GTCGGCATGG CGCTGTCGAA CGTGCAGCTG
CCCCTGATGC TCGGCCTGGC GGCGATCGCC GGGGCGCTGG CCTGGGTCAC CCTGCGCGCG
ATGCGGGCCG GCAAGCTCGG CACCCTGCTG ATCGGTCTGG CCGCGCGGCT GCCCGTGCTG
CGGGGCCTGG TGCGCACCTA CGGTCAGGCC CAGCTCGCCC GCACCGGCGC CATGCTGGCG
CGCTCGGGCG TGCCGGCGCT GAAGGCCCTG GCGATGTGCC GCGGCCTGCT GGCGCCGCCC
GACCAGCTCA GGCTCGACCG TGCACTGGCC GCCGCCACCA ACGGCGCACC GCTGGCACCG
GCCCTGCACG ACGCCGGCCT GGTCGACAGC CTCGGCCTGC GCGTGTTGCG CGTGGCCGAG
CAGACCGGCG CGCTCGACGT CGCCCTCGAC CGCCTTGCCG ACGTGCACGA CGCCGTCGTC
GAACGTGCGC TCGAACGCCT CACACGCGTC ATCGAACCGG TGCTGATGCT GACCATCGGC
ACCGTCGTCG GCGGCATCGT GGTGCTGATG TACCTGCCCA TCTTCCAACT CGCCGCGAGC
ATCCGCTGA
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| Protein sequence | MKRAAPAHAP ASRVARSPGA KPAVAAARAS GLAVSTLRDA RLDEEQFSHD LALMLRSGLS
LIEALRTVAE RQHGSAATAM QRLLEALSQG ETLSTALQSS GQFSTAMLAC VKASELTGDL
ADSLGRFAQN ATRMRQLRSR LVSACVYPGL LITVASLVVL FLLIYVVPRF AMVLEGAARD
MSPMSRLLID VGMALSNVQL PLMLGLAAIA GALAWVTLRA MRAGKLGTLL IGLAARLPVL
RGLVRTYGQA QLARTGAMLA RSGVPALKAL AMCRGLLAPP DQLRLDRALA AATNGAPLAP
ALHDAGLVDS LGLRVLRVAE QTGALDVALD RLADVHDAVV ERALERLTRV IEPVLMLTIG
TVVGGIVVLM YLPIFQLAAS IR
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