| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2561 |
|---|
| Symbol | |
|---|
| ID | 6163161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2794080 |
|---|
| End bp | 2795876 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641665336 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_001791591 |
|---|
| Protein GI | 171059242 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00296311 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGATCCCCC AAGGCTTTAT CCAGGACCTG CTCGCCCGCG CCGACATCGT CGCGGTGGTG
GGCCGCAGCG TCCAGCTCAA GAAGACCGGC GCCAACTACA GCGGCCTGTG CCCGTTCCAC
GCCGAAAAAT CGCCCAGCTT CACGGTCAGC GCGACCAAGC AGTTCTATCA CTGCTTCGGC
TGCGGGGCCA ACGGCAACGC GATCGGTTTC CTGATGGAAG CCAGCGGCAT GACCTTCGTC
GACGCAGTGC ACGAGCTCGC GCAGGAAGTC GGCGCAACGG TCCCGGAAGA AAACACCAGC
CCCGAACAAC GCGAGAAGGC CGCCCAGGCG CGCGCCCAGC AGCTCACGCT GACGGAGCTG
CAGGCGCAGG CCGCGGCCCA CTACCGCAAG CAGCTCAAGG CCAGCCCGAA GGCGATCGAC
TACCTCAAGC GGCGCGGTCT GACCGGCGAG ATCGCGGCCC GTTTCGGCCT CGGCTACGCG
CCGCCCGGCC ACCACGGCCT GGCGAGCGCG TTTGCACGTT ACGACGACCC GCTGCTGGTC
GAATCGGGGC TGGTGATCCT CGACGAAGGC CAGGATCAGC GCCGCCACGA CCGTTTTCGC
GATCGGATCA TGTTCCCGAT CCGCAACGTC AAGGGCGAGA TCATCGGCTT CGGCGGGCGG
GTGCTCGACG ACAGCAAGCC GAAGTATCTG AACTCGCCCG AGACGCCAGT GTTCGTCAAG
GGCCACGAGC TGTACGGCCT GTACGAGGCG CGCCAGGCGA TCCGCCAGCG CGGCCACGTG
CTGGTCACCG AGGGCTACAT GGACGTGGTG GCGCTGGCGC AGCTCGGCTT CGACCAGGCG
GTGGCCACGC TCGGCACCGC CTGCACCGCC GACCACGTGC AGAAGCTGGT GCGCCACACC
GACCAGGTCG TCTTCAGCTT CGACGGCGAC AACGCCGGCC GGCGCGCGGC CATGCGGGCG
ATGGAGGCGG TGCTGCCGTT TGCCACCGAC ACGCGCAGCT TCCGCTTCCT GTTCCTGCCG
GCCGAACACG ATCCCGACTC CTACGTGCGA GCCGAGGGGG CCGAGGCGTT CGAGCGCCGC
ATCGCCGAGG CATTGCCGCT GTCGAGCCAG ATGCTGCAGG TGGCGGGCGC CGACTGCGAC
CTCGTCACGC CCGAAGGACG CGCACGCCTG GTCGCCCAGG CCGAACCGCT GTGGCGCGCG
CTGCCCGCAG GCGTGCTGCG CATGCAGATG GTCAACGAGT TCGCGCAGGT CGCCCAGCTC
AATGCCGCCG ATCTGGCGGC CCGCTGGGGC GCGGGGCCGC CGCGGGCGCC GGCGCAGTCG
CAGGAACAGC CGTACGCGCC GTCGTACCCG TCCACGCCGG GGCGTGGCAA GTTCCAGCGC
CGGGACGGCC GACCCGGCAA GGACAGCGAC CTCATGGCGC AACTCGCGAG CCGCGCCGGT
GGCCGCCGGC CGAATGCGCA CCGCCCCGAA GACCGCGCCG CCTGGTTACT GCTGCAGCGC
AGCGAGTGGT GGGCCGGGCT GTCGGGCGCC GATCACGACC TGCTGTGCGA ACTGCCGGGC
TGGCACGGCG AGCTGTTCCG GCACCTCGAC CAGATGCACA TGGAGTCCGA GCCGCTGTCC
TGGCCCGAGC TGCGCGACAC CCTGGTGCAG TTCGAGTGGT GCAGCACGGC GATCGCGCTG
GTCGACGCGG CCATCCAGGG CATCGAGCCG CTGCTCGAGG ATCTGCAGCC CGTCATCACG
CAGATCCGGG GCGCCGTGCC GCAGGCCGAG GGCTGGCGCC TGCTGGGTCG GATTTGA
|
|---|
| Protein sequence | MIPQGFIQDL LARADIVAVV GRSVQLKKTG ANYSGLCPFH AEKSPSFTVS ATKQFYHCFG
CGANGNAIGF LMEASGMTFV DAVHELAQEV GATVPEENTS PEQREKAAQA RAQQLTLTEL
QAQAAAHYRK QLKASPKAID YLKRRGLTGE IAARFGLGYA PPGHHGLASA FARYDDPLLV
ESGLVILDEG QDQRRHDRFR DRIMFPIRNV KGEIIGFGGR VLDDSKPKYL NSPETPVFVK
GHELYGLYEA RQAIRQRGHV LVTEGYMDVV ALAQLGFDQA VATLGTACTA DHVQKLVRHT
DQVVFSFDGD NAGRRAAMRA MEAVLPFATD TRSFRFLFLP AEHDPDSYVR AEGAEAFERR
IAEALPLSSQ MLQVAGADCD LVTPEGRARL VAQAEPLWRA LPAGVLRMQM VNEFAQVAQL
NAADLAARWG AGPPRAPAQS QEQPYAPSYP STPGRGKFQR RDGRPGKDSD LMAQLASRAG
GRRPNAHRPE DRAAWLLLQR SEWWAGLSGA DHDLLCELPG WHGELFRHLD QMHMESEPLS
WPELRDTLVQ FEWCSTAIAL VDAAIQGIEP LLEDLQPVIT QIRGAVPQAE GWRLLGRI
|
|---|
| |